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The map label for this gene is ydfC

Identifier: 16077603

GI number: 16077603

Start: 582536

End: 583456

Strand: Reverse

Name: ydfC

Synonym: BSU05360

Alternate gene names: 16077603

Gene position: 583456-582536 (Counterclockwise)

Preceding gene: 16077605

Following gene: 16077598

Centisome position: 13.84

GC content: 41.37

Gene sequence:

>921_bases
ATGCGAAAGAAAACAGTTCAAATAATGATATCTCATAGTCTCATGATTGGTTTATGGGCATCTGCTTTTCCGGGAATTCG
CGCAGGACTTGAAGGGTACACGCCAGAACACCTTGCTTTATTTCGTTTGTTAATCGGCTCTATGGCATTATTGCTTTTTG
CTGTTTTGACTCAGATGCGCCTACCCGACTTGAAAGACATTCCTGCCATTTTTCTTTTAGGGTTTTTAGGATTTGCATTC
TATCACATTTTGCTGAACATCGGTGAAAAAACAGTTAGTGCCGGAGTTGCAAGCTTACTCGTTACTACGGCACCGATCTT
CTCAGCCATGCTATCCCGCCTGTTTTATAAAGAGCATTTTGGATTTACGAAATGGCTTGGCTCTATGATCAGTTTATTGG
GTGTATTATTGATTGCATTTGGGGCGGGAGACTTTACATATTCAATGAGCGGTATCTTGGTCATCCTGCTGGCAGCATTT
TCGGAGAGTATTTATTTCGTTTTTCAAGCCCGCTATATAAAAAAATATGGTTTTATTCCATTCGTTACATTCACCATTTG
GGGCGGAACAATACCTATGCTTGTGTTTCTGCCAGGCTTAGGCGAAGAGATGATGAACGCTTCAATAAGCGCAACTTTGT
CTATCGTTTACTTAGGATTATTGCCGACGGTTATTCCTTACTTCGCACTAGCATATGTCACTTCATTCGTCGGTGCTTCA
GAAGCAACCCTTTCACTTTATGTTACACCGGCTTTAGCCTTGATCATATCTTGGCTCTGGATCGGCGAGATACCCACACT
GCTCTCTCTGCTAGGCGGAGTGGTTACAGTTGGCGGGGTATGTTTTACCTACCTAAAAGTAAATAAAATGAATAAGATTT
TCATCACCCATTTTTCTGCTAAAAGGGTAAAAAAACTCTAA

Upstream 100 bases:

>100_bases
TCAAAATCTATTGAACTGGTTGAAGCCATATCATCAAATCTTTATTAGTATAGAAACACATTAAATAACTGGTTGGTTTT
TGTAAAGAGGAGTGAGAGGA

Downstream 100 bases:

>100_bases
AACAAAAAAGATACCAACATCGGTTGGTATCTCCTTTTAAGGTTCTTTCATTAAGGTTAGCCAGAGTAGTAAATAGTGTA
TTCCGTTACCGTCTTAAACC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMRLPDLKDIPAIFLLGFLGFAF
YHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAF
SESIYFVFQARYIKKYGFIPFVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGAS
EATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKIFITHFSAKRVKKL

Sequences:

>Translated_306_residues
MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMRLPDLKDIPAIFLLGFLGFAF
YHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAF
SESIYFVFQARYIKKYGFIPFVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGAS
EATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKIFITHFSAKRVKKL
>Mature_306_residues
MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMRLPDLKDIPAIFLLGFLGFAF
YHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHFGFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAF
SESIYFVFQARYIKKYGFIPFVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGAS
EATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKIFITHFSAKRVKKL

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDFC_BACSU (P96680)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   A69780
- RefSeq:   NP_388417.1
- ProteinModelPortal:   P96680
- EnsemblBacteria:   EBBACT00000001750
- GeneID:   938086
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05360
- NMPDR:   fig|224308.1.peg.536
- GenoList:   BSU05360
- GeneTree:   EBGT00070000031858
- HOGENOM:   HBG667229
- OMA:   YHIALNY
- ProtClustDB:   CLSK2752325
- BioCyc:   BSUB:BSU05360-MONOMER
- GO:   GO:0006810
- InterPro:   IPR000620

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 33560; Mature: 33560

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd1cde88)-; HASH(0x40a8b194)-; HASH(0xcfd5804)-; HASH(0xc4440c4)-; HASH(0xcd05958)-; HASH(0xc879de4)-; HASH(0xd08b46c)-; HASH(0xcd587c4)-; HASH(0xc2038cc)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMR
CCCHHEEHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
LPDLKDIPAIFLLGFLGFAFYHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAFSESIYFVFQARYIKKYGFIP
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
FVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGAS
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKIFITHFSA
CCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
KRVKKL
HHHHCH
>Mature Secondary Structure
MRKKTVQIMISHSLMIGLWASAFPGIRAGLEGYTPEHLALFRLLIGSMALLLFAVLTQMR
CCCHHEEHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
LPDLKDIPAIFLLGFLGFAFYHILLNIGEKTVSAGVASLLVTTAPIFSAMLSRLFYKEHF
CCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFTKWLGSMISLLGVLLIAFGAGDFTYSMSGILVILLAAFSESIYFVFQARYIKKYGFIP
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
FVTFTIWGGTIPMLVFLPGLGEEMMNASISATLSIVYLGLLPTVIPYFALAYVTSFVGAS
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EATLSLYVTPALALIISWLWIGEIPTLLSLLGGVVTVGGVCFTYLKVNKMNKIFITHFSA
CCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
KRVKKL
HHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377