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The map label for this gene is dctB

Identifier: 16077511

GI number: 16077511

Start: 496646

End: 497698

Strand: Reverse

Name: dctB

Synonym: BSU04440

Alternate gene names: 16077511

Gene position: 497698-496646 (Counterclockwise)

Preceding gene: 16077520

Following gene: 16077510

Centisome position: 11.81

GC content: 43.78

Gene sequence:

>1053_bases
ATGAAGAGTTTGCTTGCATGTCTCGCACTGATGATCGCTGGAATTGCAACCGCTTTATTTATCGGATTCCATGATCATAC
CGGCAATAAAAAGATTGTTTATGATGACGACCAGGAAGGCCTGCAGGATCAAATCGTGTTTAAATTCAGCCACGTGGTTG
CTGAAAATACGCCAAAAGGGCTGGCCGCCAATAAATTCGCTGATCTGGTGAACGAAAAATCAGGCGGAAAAATAAAAATA
GAAGTATTTCCGAATGGAAGCCTGTACTCGGACATTGAAGAAATTGAAGCATTGCAAAACGGCGATGTTCAATTTATCGC
CCCCTCCACATCGAAGCTCGGCATGCTCTCGCCTGAATGGGGAGTGCTGGATCTGCCGTATGCATTTACAGATTACAACG
CCGTCAAAAAAGGGCTGAACGGAAGCATCGGCACACAGCTGTTTGATTCTCTAAAGAAAAACCAATTGAAAGGATTGGCC
TATTGGACGAACGGCTTTAAGCAAATCACAACAAATCAAGGGCCGGTCAAAACACCGGATGACTTAAAAGGGCAGGATCT
GCGCATTATGCAAAGCGATGTGATTGAGGATCAGTTCAAGCTGCTTGGCGCAACACCTCATCAGGAATCCTTCAATTCTA
CCTTTCAGCTGTTAGAAAACAATGTAGTCGATGGCGAAGAAAATACAATTTCAAACATCTATTCTAAAAAATTTTATAAT
GTTCAGGACTATTTGACAATAAGCAGCCACGGTTATCTCGGCTACGCTGTCATGACTGATGAACACTTCTGGAAGGCGCA
AACACCAGAAACAAGACGCATTTTGACTGAAGCGATGAAGGAGACAACGGAGTGGAATGAAACGTATGCCGAACAAATGA
ACAAGGAGCAGCTGGAAGAAATCAAAAAGAATTCTGCTATACATATTTATGAGCTGTCAGATAAAGAGAAACAAGAATGG
ATGAAGCGTCTTGACCCTGTTTACCGGCAGTATGAGCCCATCTTTGGCCGGGAGCTGATCCGGGAACTGTTGGAGCTGCG
AAAAGATTCATAG

Upstream 100 bases:

>100_bases
TCCAACGGATTGAGAGCTTCTTTTTGTTCATCAGCTTCTCCTTTCAGGTCTTTACGAATGTCATAGCCCCCATTATCCTT
AACATAGGGGAGGGCTTTTC

Downstream 100 bases:

>100_bases
TTCCCATCTCGATACGCTGTTTTTCGTTTATCTTTCTATCGATCGGAAATATAAAAAGAGATAAACGAAAAAGGAGATGG
GTACATGTTTAAGCACACAA

Product: C4-dicarboxylate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQIVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKI
EVFPNGSLYSDIEEIEALQNGDVQFIAPSTSKLGMLSPEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLA
YWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNIYSKKFYN
VQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEW
MKRLDPVYRQYEPIFGRELIRELLELRKDS

Sequences:

>Translated_350_residues
MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQIVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKI
EVFPNGSLYSDIEEIEALQNGDVQFIAPSTSKLGMLSPEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLA
YWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNIYSKKFYN
VQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEW
MKRLDPVYRQYEPIFGRELIRELLELRKDS
>Mature_350_residues
MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQIVFKFSHVVAENTPKGLAANKFADLVNEKSGGKIKI
EVFPNGSLYSDIEEIEALQNGDVQFIAPSTSKLGMLSPEWGVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLA
YWTNGFKQITTNQGPVKTPDDLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNIYSKKFYN
VQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEEIKKNSAIHIYELSDKEKQEW
MKRLDPVYRQYEPIFGRELIRELLELRKDS

Specific function: Part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. Responsible for growth on fumarate and succinate but not malate. Is not directly involved in C4-dicarboxylate uptake, but plays a sensory role in the dctS/dctR two-com

COG id: COG1638

COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component

Gene ontology:

Cell location: Secreted (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family

Homologues:

Organism=Escherichia coli, GI1790004, Length=269, Percent_Identity=28.996282527881, Blast_Score=146, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCTB_BACSU (P96600)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   H69770
- RefSeq:   NP_388325.1
- ProteinModelPortal:   P96600
- SMR:   P96600
- EnsemblBacteria:   EBBACT00000000662
- GeneID:   938226
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU04440
- NMPDR:   fig|224308.1.peg.444
- GenoList:   BSU04440
- GeneTree:   EBGT00050000000975
- HOGENOM:   HBG662660
- OMA:   DGEENTI
- PhylomeDB:   P96600
- ProtClustDB:   CLSK886732
- BioCyc:   BSUB:BSU04440-MONOMER
- InterPro:   IPR018389
- InterPro:   IPR004682
- TIGRFAMs:   TIGR00787

Pfam domain/function: PF03480 SBP_bac_7

EC number: NA

Molecular weight: Translated: 39862; Mature: 39862

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQIVFKFSHVVAENTPKG
CHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCHHCHHHHHHHHHHHHHHCCCCCC
LAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNGDVQFIAPSTSKLGMLSPEW
CHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
GVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLAYWTNGFKQITTNQGPVKTPD
CEEECCCHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCHHHEECCCCCEECCCCCCCCCCC
DLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNIYSKKFYN
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
VQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEE
HHHEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPIFGRELIRELLELRKDS
HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSLLACLALMIAGIATALFIGFHDHTGNKKIVYDDDQEGLQDQIVFKFSHVVAENTPKG
CHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCHHCHHHHHHHHHHHHHHCCCCCC
LAANKFADLVNEKSGGKIKIEVFPNGSLYSDIEEIEALQNGDVQFIAPSTSKLGMLSPEW
CHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
GVLDLPYAFTDYNAVKKGLNGSIGTQLFDSLKKNQLKGLAYWTNGFKQITTNQGPVKTPD
CEEECCCHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCHHHEECCCCCEECCCCCCCCCCC
DLKGQDLRIMQSDVIEDQFKLLGATPHQESFNSTFQLLENNVVDGEENTISNIYSKKFYN
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
VQDYLTISSHGYLGYAVMTDEHFWKAQTPETRRILTEAMKETTEWNETYAEQMNKEQLEE
HHHEEEEECCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IKKNSAIHIYELSDKEKQEWMKRLDPVYRQYEPIFGRELIRELLELRKDS
HHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 10708364