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The map label for this gene is ydbD

Identifier: 16077510

GI number: 16077510

Start: 495740

End: 496561

Strand: Reverse

Name: ydbD

Synonym: BSU04430

Alternate gene names: 16077510

Gene position: 496561-495740 (Counterclockwise)

Preceding gene: 16077511

Following gene: 16077505

Centisome position: 11.78

GC content: 49.15

Gene sequence:

>822_bases
ATGTTTAAGCACACAAAAATGCTGCAGCATCCTGCTAAACCAGATCGTCCAGATCCATTATTCGCTAAAAAAATGCAAGA
AATTTTAGGCGGGCAATTCGGAGAAATTTCAGTTGCCATGCAGTACTTATTTCAAGGCTGGAACACAAGAGGAAATGAAA
AATACAAGGACTTGCTGATGGATACGGCAACTGAGGAGCTCGGGCATGTTGAAATGATCGCAACGATGATTGCCAGACTT
CTTGAGGATGCCCCTCTTGATCAGCAGGAAAAAGCTGCTGAAGATCCGGTCATCGGCTCCATCCTAGGCGGCATGAACCC
TCACCATGCGATTGTATCAGGACTTGGCGCCATGCCGGAAAGCAGTACAGGCGTACCTTGGAGCGGCGGTTATATCGTAG
CAAGCGGAAACCTGCTGGCAGACTTCCGCGCCAACCTGAATGCGGAATCTCAGGGCCGTCTGCAGGTCGCACGCCTGTTT
GAAATGACGGATGACAAAGGCGTCAAAGATATGCTCAGCTTCCTGCTGGCGCGTGACACGATGCACCAGAACCAATGGCT
CGCCGCCATTAAAGAATTAGAAGCACAGGAAGGTCCGGTTGTGCCGGGTACATTCCCGAAAGCGCTCGAAAAACAAGAGT
TCTCACATCAGCTTATCAATTTCTCTGAAGGCGAAGTAAGCGCCGAGCAAAACTGGCTGAATGAAAAAGCGCCGGACGGA
GAAGCCTTTGAATATGTGAAAGAAGCAAAAACGTTTGGAGAAAAACCGGAGTTAAAACCAGCACCGCCTTTTGTTCATAA
TACACTTCCGGGACGCGAGTAA

Upstream 100 bases:

>100_bases
GCGAAAAGATTCATAGTTCCCATCTCGATACGCTGTTTTTCGTTTATCTTTCTATCGATCGGAAATATAAAAAGAGATAA
ACGAAAAAGGAGATGGGTAC

Downstream 100 bases:

>100_bases
AGAGACAAGCCCAAAACATGATGTTTTGGGCTTTGATTATGCCTTCAGAACCGTCCAGTTTGGTTCGTACCGGATATCGG
GGTTATGTAACAGATCGTGA

Product: manganese-containing catalase

Products: NA

Alternate protein names: General stress protein 80; GSP80

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL
LEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF
EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEVSAEQNWLNEKAPDG
EAFEYVKEAKTFGEKPELKPAPPFVHNTLPGRE

Sequences:

>Translated_273_residues
MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL
LEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF
EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEVSAEQNWLNEKAPDG
EAFEYVKEAKTFGEKPELKPAPPFVHNTLPGRE
>Mature_273_residues
MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEELGHVEMIATMIARL
LEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLF
EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEVSAEQNWLNEKAPDG
EAFEYVKEAKTFGEKPELKPAPPFVHNTLPGRE

Specific function: Unknown

COG id: COG3546

COG function: function code P; Mn-containing catalase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the manganese catalase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): MCAT_BACSU (P80878)

Other databases:

- EMBL:   AB001488
- EMBL:   AL009126
- PIR:   G69770
- RefSeq:   NP_388324.1
- ProteinModelPortal:   P80878
- SMR:   P80878
- PeroxiBase:   6145
- EnsemblBacteria:   EBBACT00000000784
- GeneID:   938232
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU04430
- NMPDR:   fig|224308.1.peg.443
- GenoList:   BSU04430
- GeneTree:   EBGT00050000002756
- HOGENOM:   HBG462336
- OMA:   GHVEMIA
- ProtClustDB:   CLSK2301430
- BioCyc:   BSUB:BSU04430-MONOMER
- BRENDA:   1.11.1.6
- InterPro:   IPR007760
- InterPro:   IPR012347
- InterPro:   IPR009078
- Gene3D:   G3DSA:1.20.1260.10

Pfam domain/function: PF05067 Mn_catalase; SSF47240 Ferritin/RR_like

EC number: =1.11.1.6

Molecular weight: Translated: 30258; Mature: 30258

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLM
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
DTATEELGHVEMIATMIARLLEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHCCCCC
SSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLFEMTDDKGVKDMLSFLLARDT
CCCCCCCCCCEEEECCCEEEHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEVSAEQNWLNEKAPDG
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
EAFEYVKEAKTFGEKPELKPAPPFVHNTLPGRE
HHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MFKHTKMLQHPAKPDRPDPLFAKKMQEILGGQFGEISVAMQYLFQGWNTRGNEKYKDLLM
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
DTATEELGHVEMIATMIARLLEDAPLDQQEKAAEDPVIGSILGGMNPHHAIVSGLGAMPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHCCCCC
SSTGVPWSGGYIVASGNLLADFRANLNAESQGRLQVARLFEMTDDKGVKDMLSFLLARDT
CCCCCCCCCCEEEECCCEEEHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MHQNQWLAAIKELEAQEGPVVPGTFPKALEKQEFSHQLINFSEGEVSAEQNWLNEKAPDG
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
EAFEYVKEAKTFGEKPELKPAPPFVHNTLPGRE
HHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659