| Definition | Bacillus subtilis subsp. subtilis str. 168 chromosome, complete genome. |
|---|---|
| Accession | NC_000964 |
| Length | 4,215,606 |
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The map label for this gene is nasD
Identifier: 16077399
GI number: 16077399
Start: 355764
End: 358181
Strand: Reverse
Name: nasD
Synonym: BSU03300
Alternate gene names: 16077399
Gene position: 358181-355764 (Counterclockwise)
Preceding gene: 255767097
Following gene: 16077398
Centisome position: 8.5
GC content: 49.09
Gene sequence:
>2418_bases ATGGGAAAAAAACAGCTAGTTCTTGTTGGTAATGGAATGGCCGGGGTAAGGGCCATTGAAGAGATACTGAGTGTTGCTAA AGACGAGTTTCAGATCACAATTTTCGGTGCCGAACCGCATCCCAATTACAACCGAATCCTTTTGTCAAAAGTGCTTCAAG GCGATACAGATATTAAAGATATTACGTTAAACGATTGGGACTGGTACGAAGAAAACAACATTCAATTGTATACAAATGAA ACAGTCATCAAAGTGGACACGGAAAACAAAACAGTCATCACAGATGCAGACAGAATCCAGCCTTACGATGAATTGATCCT GGCGACAGGATCGGTCCCTTTTATCCTTCCGATTCCGGGCGCAGACAAAAAAGGCGTCACAGCTTTCCGGGACATAAAAG ATACAGACACAATGCTCGCCGCGTCAAAACAATATAAAAAAGCTGCCGTCATCGGCGGAGGACTACTTGGTTTGGAAGCA GCTCGCGGACTGCTGAATCTCGGCATGGACGTGTCCGTCATCCACCTTGCCCCATTCCTGATGGAGCGCCAGCTTGATGC AACGGCAGGACGCCTGCTGCAAAACGAGTTAGAAAAACAAGGTATGACCTTTTTACTTGAAAAGCAAACAGAAGAAATTG TCGGTGACGACCGTGTCGAAGGCCTCCGATTCAAGGATGGCACAAGCATTGAAGCTGATTTAGTCGTCATGGCTGTCGGC ATCCGCCCAAATACAACGCTCGGGGCCGAGAGCGGCATTCCGGTTAACCGCGGCATCATCGTCAACGATTATATGCAGAC TGAAATCCCGCACATTTACGCGGTCGGCGAATGTGCCGAGCACCGAGGAATCGCCTACGGGCTTGTGGCGCCGCTGTATG AACAGGCAAAAGTGCTGGCAAAGCATATGTGCGGCATCGAAACAAAACCGTATGAGGGCTCCGTTCTCTCCACACAGTTA AAGGTATCAGGCGTCGAGGTCTTCTCTGCCGGTGACTTTAACGAATCAGAGGAGAAAAAAGCGATTAAAGTCTTCGATGA GCAGGACGGCATCTATAAAAAAATTGTCCTGAGAGGCAATCAAATTGTCGGTGCTGTTTTATTCGGCGACAGCAGCGAAG GCAATCGCCTGTTTTCTATGATTCAAAAAGAAGCCGATATCTCTGAAACCTCTAAAATATCAATCTTACAGCCCCTCAGC CAGGAAGCAGGCACAAGCATAACCGCAGCGATGAGCGACGATGAAATCATCTGCGGCTGTAACGGCGTGTCAAAAGGTGC GATTATTCAAGCCATACAGGAAAAGGGCTGCTCGTCAACGGACGAAATCAAAGCATGCACCGGCGCATCCCGCTCATGCG GAGGCTGTAAGCCGCTCGTAGAAGAAATCCTCCAGCATACGCTCGGATCAGACTTTGATGCGTCAGCGCAAAAAGAAGCC ATTTGCGGCTGCACCACATTGTCGAGAGATGAAGTCGTAGAAGAAATCAAAGCCAAAGGGCTGTCACATACAAGAGAAGT CATGAATGTGCTCGGCTGGAAAACGCCAGAAGGCTGTTCTAAATGCCGACCCGCTCTGAACTACTACTTAGGCATGATCA ATCCAACCAAATACGAGGATGACCGGACATCCCGCTTTGTTAATGAACGAATGCACGCCAATATTCAAAAAGACGGAACA TACTCAGTCGTTCCTCGGATGTACGGCGGCGTGACCAACTCCACAGATTTGCGCAAGATCGCCGATGTCGTTGACAAATA TGAGATCCCGCTCGTGAAAATGACAGGCGGCCAGCGAATTGATCTTATCGGCGTGAAAAAAGAAGACCTTCCGAAGGTAT GGGAAGATCTTGATATGCCATCGGGCTACGCGTACGGAAAAACGCTCCGCACAGTGAAAACATGTGTAGGCGAGCAATTC TGCCGCTTCGGCACACAAGACTCCATGGCACTGGGCATTGCGCTTGAGAAAAAATTCGAAGGGCTGAACACGCCTCACAA AGTCAAAATGGCCGTGTCTGCCTGCCCGCGAAACTGTGCGGAATCCGGCATTAAGGACCTTGGCGTTGTCGGCATCGACG GAGGCTGGGAGCTTTATGTCGGCGGAAACGGCGGAACCCATTTGCGTGCCGGCGATTTGCTGATGAAGGTGAAAACAAAT GAAGAAGTCTTAGAATACGCGGGCGCTTACCTGCAATATTACAGGGAAACCGCAAACTATCTGGAGCGTACGTCCGCATG GCTTGAGCGCGTCGGTTTATCCCATGTCCAATCCGTGTTAAACGATCCGGAAAAGCGGCAGGAGCTGAACGGCCGAATGA ATGAAACACTCTCTGTCCACAAGGATCCGTGGAAAGACTTTTTAGAGGATAAACAAACCTCTAAAGAATTATTTGAAAAT GTCGTGACCACATCATAA
Upstream 100 bases:
>100_bases ACTTTTCGTATATTTTGTTACATTTTATAACATGTATCTTAAATATTCCTTTTTGCTGTGCTACGCTGGAAAAAACATTT GATAAGGAGCGGATCATCTG
Downstream 100 bases:
>100_bases TGACAAAAACTATCATTGAGGAGGAATGGACATGGTAAACAAAGACGTAACAAAAGTATGTATCGGAAAAATTGAAGAAT TGCCTGAACAATTAGGCAAA
Product: assimilatory nitrite reductase subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 805; Mature: 804
Protein sequence:
>805_residues MGKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKDITLNDWDWYEENNIQLYTNE TVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEA ARGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVG IRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKHMCGIETKPYEGSVLSTQL KVSGVEVFSAGDFNESEEKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSSEGNRLFSMIQKEADISETSKISILQPLS QEAGTSITAAMSDDEIICGCNGVSKGAIIQAIQEKGCSSTDEIKACTGASRSCGGCKPLVEEILQHTLGSDFDASAQKEA ICGCTTLSRDEVVEEIKAKGLSHTREVMNVLGWKTPEGCSKCRPALNYYLGMINPTKYEDDRTSRFVNERMHANIQKDGT YSVVPRMYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKEDLPKVWEDLDMPSGYAYGKTLRTVKTCVGEQF CRFGTQDSMALGIALEKKFEGLNTPHKVKMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTN EEVLEYAGAYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVHKDPWKDFLEDKQTSKELFEN VVTTS
Sequences:
>Translated_805_residues MGKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKDITLNDWDWYEENNIQLYTNE TVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEA ARGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVG IRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKHMCGIETKPYEGSVLSTQL KVSGVEVFSAGDFNESEEKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSSEGNRLFSMIQKEADISETSKISILQPLS QEAGTSITAAMSDDEIICGCNGVSKGAIIQAIQEKGCSSTDEIKACTGASRSCGGCKPLVEEILQHTLGSDFDASAQKEA ICGCTTLSRDEVVEEIKAKGLSHTREVMNVLGWKTPEGCSKCRPALNYYLGMINPTKYEDDRTSRFVNERMHANIQKDGT YSVVPRMYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKEDLPKVWEDLDMPSGYAYGKTLRTVKTCVGEQF CRFGTQDSMALGIALEKKFEGLNTPHKVKMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTN EEVLEYAGAYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVHKDPWKDFLEDKQTSKELFEN VVTTS >Mature_804_residues GKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKDITLNDWDWYEENNIQLYTNET VIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEAA RGLLNLGMDVSVIHLAPFLMERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVGI RPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLAKHMCGIETKPYEGSVLSTQLK VSGVEVFSAGDFNESEEKKAIKVFDEQDGIYKKIVLRGNQIVGAVLFGDSSEGNRLFSMIQKEADISETSKISILQPLSQ EAGTSITAAMSDDEIICGCNGVSKGAIIQAIQEKGCSSTDEIKACTGASRSCGGCKPLVEEILQHTLGSDFDASAQKEAI CGCTTLSRDEVVEEIKAKGLSHTREVMNVLGWKTPEGCSKCRPALNYYLGMINPTKYEDDRTSRFVNERMHANIQKDGTY SVVPRMYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRIDLIGVKKEDLPKVWEDLDMPSGYAYGKTLRTVKTCVGEQFC RFGTQDSMALGIALEKKFEGLNTPHKVKMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTNE EVLEYAGAYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVHKDPWKDFLEDKQTSKELFENV VTTS
Specific function: Required for nitrite assimilation
COG id: COG1251
COG function: function code C; NAD(P)H-nitrite reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Homologues:
Organism=Homo sapiens, GI21389617, Length=275, Percent_Identity=28.3636363636364, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI226437568, Length=275, Percent_Identity=28.3636363636364, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI65787454, Length=275, Percent_Identity=28.3636363636364, Blast_Score=105, Evalue=2e-22, Organism=Escherichia coli, GI1789765, Length=800, Percent_Identity=36.25, Blast_Score=457, Evalue=1e-130, Organism=Escherichia coli, GI1789065, Length=367, Percent_Identity=26.9754768392371, Blast_Score=135, Evalue=1e-32, Organism=Escherichia coli, GI1788892, Length=286, Percent_Identity=26.5734265734266, Blast_Score=102, Evalue=9e-23, Organism=Escherichia coli, GI1787352, Length=305, Percent_Identity=26.5573770491803, Blast_Score=63, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17559934, Length=412, Percent_Identity=24.0291262135922, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI281359715, Length=326, Percent_Identity=26.9938650306748, Blast_Score=123, Evalue=6e-28, Organism=Drosophila melanogaster, GI281359713, Length=326, Percent_Identity=26.9938650306748, Blast_Score=123, Evalue=6e-28, Organism=Drosophila melanogaster, GI24639250, Length=326, Percent_Identity=26.9938650306748, Blast_Score=123, Evalue=6e-28, Organism=Drosophila melanogaster, GI18543267, Length=326, Percent_Identity=26.9938650306748, Blast_Score=123, Evalue=6e-28, Organism=Drosophila melanogaster, GI24639252, Length=326, Percent_Identity=26.9938650306748, Blast_Score=123, Evalue=6e-28, Organism=Drosophila melanogaster, GI24639257, Length=326, Percent_Identity=26.9938650306748, Blast_Score=122, Evalue=1e-27, Organism=Drosophila melanogaster, GI24585130, Length=336, Percent_Identity=22.6190476190476, Blast_Score=98, Evalue=3e-20, Organism=Drosophila melanogaster, GI28573993, Length=311, Percent_Identity=23.7942122186495, Blast_Score=68, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581020, Length=311, Percent_Identity=23.7942122186495, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NASD_BACSU (P42435)
Other databases:
- EMBL: D30689 - EMBL: D50453 - EMBL: AL009126 - PIR: I40029 - RefSeq: NP_388212.1 - ProteinModelPortal: P42435 - SMR: P42435 - EnsemblBacteria: EBBACT00000002961 - GeneID: 938329 - GenomeReviews: AL009126_GR - KEGG: bsu:BSU03300 - NMPDR: fig|224308.1.peg.331 - GenoList: BSU03300 - GeneTree: EBGT00070000031876 - HOGENOM: HBG285339 - OMA: YLISTWP - PhylomeDB: P42435 - ProtClustDB: CLSK872770 - BioCyc: BSUB:BSU03300-MONOMER - BRENDA: 1.7.1.4 - InterPro: IPR007419 - InterPro: IPR013027 - InterPro: IPR005117 - InterPro: IPR012744 - InterPro: IPR017121 - InterPro: IPR006067 - InterPro: IPR006066 - InterPro: IPR001327 - PIRSF: PIRSF037149 - PRINTS: PR00368 - PRINTS: PR00397 - TIGRFAMs: TIGR02374
Pfam domain/function: PF04324 Fer2_BFD; PF01077 NIR_SIR; PF03460 NIR_SIR_ferr; PF00070 Pyr_redox; PF07992 Pyr_redox_2; SSF55124 NiR_SiRalpha_1/3
EC number: =1.7.1.4
Molecular weight: Translated: 88433; Mature: 88302
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: PS00365 NIR_SIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKD CCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCE ITLNDWDWYEENNIQLYTNETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPG EEECCCCCEECCCEEEEECCEEEEEECCCCEEEECHHHCCCHHHHEEECCCCCEEEECCC ADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFL CCCCCCHHHHCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCEEHHHHHHHH MERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVG HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEEECCCCCCCEEEEEEEEC IRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLA CCCCCCCCCCCCCCCCCCEEEECHHHHCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHH KHMCGIETKPYEGSVLSTQLKVSGVEVFSAGDFNESEEKKAIKVFDEQDGIYKKIVLRGN HHHCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCHHHHHHEEECCCCCCEEHHEEECC QIVGAVLFGDSSEGNRLFSMIQKEADISETSKISILQPLSQEAGTSITAAMSDDEIICGC EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEC NGVSKGAIIQAIQEKGCSSTDEIKACTGASRSCGGCKPLVEEILQHTLGSDFDASAQKEA CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH ICGCTTLSRDEVVEEIKAKGLSHTREVMNVLGWKTPEGCSKCRPALNYYLGMINPTKYED HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC DRTSRFVNERMHANIQKDGTYSVVPRMYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRI HHHHHHHHHHHHCCCCCCCCEEECHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEE DLIGVKKEDLPKVWEDLDMPSGYAYGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFE EEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHC GLNTPHKVKMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTN CCCCCHHHHHHHHHCCHHHHHCCHHHCCEEEECCCEEEEECCCCCCEEEECCEEEEEECC EEVLEYAGAYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHCCCHHCCEECC KDPWKDFLEDKQTSKELFENVVTTS CCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GKKQLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDIKD CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCE ITLNDWDWYEENNIQLYTNETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPG EEECCCCCEECCCEEEEECCEEEEEECCCCEEEECHHHCCCHHHHEEECCCCCEEEECCC ADKKGVTAFRDIKDTDTMLAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFL CCCCCCHHHHCCCCHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCEEHHHHHHHH MERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVG HHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEEECCCCCCCEEEEEEEEC IRPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYGLVAPLYEQAKVLA CCCCCCCCCCCCCCCCCCEEEECHHHHCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHH KHMCGIETKPYEGSVLSTQLKVSGVEVFSAGDFNESEEKKAIKVFDEQDGIYKKIVLRGN HHHCCCCCCCCCCCEEEEEEEECCEEEEECCCCCCCHHHHHHEEECCCCCCEEHHEEECC QIVGAVLFGDSSEGNRLFSMIQKEADISETSKISILQPLSQEAGTSITAAMSDDEIICGC EEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCEEEEC NGVSKGAIIQAIQEKGCSSTDEIKACTGASRSCGGCKPLVEEILQHTLGSDFDASAQKEA CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHH ICGCTTLSRDEVVEEIKAKGLSHTREVMNVLGWKTPEGCSKCRPALNYYLGMINPTKYED HHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC DRTSRFVNERMHANIQKDGTYSVVPRMYGGVTNSTDLRKIADVVDKYEIPLVKMTGGQRI HHHHHHHHHHHHCCCCCCCCEEECHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEE DLIGVKKEDLPKVWEDLDMPSGYAYGKTLRTVKTCVGEQFCRFGTQDSMALGIALEKKFE EEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHC GLNTPHKVKMAVSACPRNCAESGIKDLGVVGIDGGWELYVGGNGGTHLRAGDLLMKVKTN CCCCCHHHHHHHHHCCHHHHHCCHHHCCEEEECCCEEEEECCCCCCEEEECCEEEEEECC EEVLEYAGAYLQYYRETANYLERTSAWLERVGLSHVQSVLNDPEKRQELNGRMNETLSVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHCCCHHCCEECC KDPWKDFLEDKQTSKELFENVVTTS CCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7868621; 8969502; 9384377