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The map label for this gene is yceJ

Identifier: 16077365

GI number: 16077365

Start: 319180

End: 320352

Strand: Reverse

Name: yceJ

Synonym: BSU02960

Alternate gene names: 16077365

Gene position: 320352-319180 (Counterclockwise)

Preceding gene: 16077366

Following gene: 255767077

Centisome position: 7.6

GC content: 48.59

Gene sequence:

>1173_bases
TTGAATCGCATTTGGCTTTTCTTCAGTGTCATGTTTGTCATTGGCACGGATACCTTTTTGCTTTCGCCGCTTCTCCCCCT
TTTACAGGATCAGTTTCATGTCTCTACTGATTTGTCAGGCTGGATGGTCAGTGCTTATGCACTCGGTTATGCACTCTTCG
CTTTCATTGCAGGCCCAATCTCAGACCGGCTGAACAGGAAAACAGTCATGCTGTGGGGACTTGCAGGCTTTATCGTATCC
ACATTTTTATGCGGCATCGCTCCCTCTTTTGCCGCCATGTGCCTGTTCCGTTTTGCCGCAGGCGTTAGCGCTGCGTTTGT
GACGCCTCAAATTTGGGCGTCCATCCCAGTCATTGTCCAGCCTTCTCAGATCATAAAAGGCATGGGGATTGCGACAGCAG
GTTTGGCCGCTTCACAAATGCTCGGACTTCCTATTGGAGGGTTTCTCGCTTCCTTTACATGGCATACGCCATTTTTCGTT
TTGTCAGCGTGCTCGCTTATTCTTCTATTGATCCTGGCGGCGGTCATGCCTGGCATCCGGCCTTCTGAACCATTGGCGCG
CCCATCAATTGTCAACCCCTATCGGGAGCTTTTTTCATTGCCGAAAACATCGGTCATTCTGCTTGCCTATTTTCTGTTTC
AAACCGGAAACTTCGCATCGTTCAGCTTTCTGGGTACTTGGCTTTCCGCGGATTATCATTTAACCGTGTCACAAATTGGC
GCAGCTATGCTTGTACTCGGACTGGGAAATATGCTCGGGAGCCTTATCGGCAGCCGGGTTTCAGAAAAGCTGGGCATGTT
TAAAACACTGATCAGCGGGATGCTGCTAATGGGCGCTCTCTATTTCGCTCTTCCGTTCTTTCCAAACTTGTTTTTAGTAG
AAGCCGGCTTTTTTCTCACGTTCTTTACAGCTGGCATCATCTTTCCGTTAATGATGGGTGTCTTTCAATCCATTGCACCA
AATGCGCGAGGAACCATCGCTTCCCTTTCCAATGCCGCTATGTATGCCGGAACCACTGTCGGTACAAGTATTGCAGGTTT
TTTATATCAAAGCACACAGCATTTCGGAGCTGTCACAGGATTTACTGCCATTCTGTTCATACTTTCTATGACGCTCTACC
AGACAATCAGTAAAACCGGGAAACGCCAATCCACAGCCCGGGCGCAATTGTAA

Upstream 100 bases:

>100_bases
CATACCTGCCTGGCTTTTTGGAAACCCTCTAACAAAGGGTTTTCTCTATACATATCTGTTTCATAGTTTTAAAGTTATAA
AACAATAGGAGTGATAAAAT

Downstream 100 bases:

>100_bases
AAAAGCACCTCATTCAAGAGGTGCCTCAGATTGTTGACAAAATCTTTTCAGCGTGATTGAAAACCCTTGAAGTCTAGGAA
GGACGAGCATAGGAGCGGAC

Product: efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MNRIWLFFSVMFVIGTDTFLLSPLLPLLQDQFHVSTDLSGWMVSAYALGYALFAFIAGPISDRLNRKTVMLWGLAGFIVS
TFLCGIAPSFAAMCLFRFAAGVSAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAASQMLGLPIGGFLASFTWHTPFFV
LSACSLILLLILAAVMPGIRPSEPLARPSIVNPYRELFSLPKTSVILLAYFLFQTGNFASFSFLGTWLSADYHLTVSQIG
AAMLVLGLGNMLGSLIGSRVSEKLGMFKTLISGMLLMGALYFALPFFPNLFLVEAGFFLTFFTAGIIFPLMMGVFQSIAP
NARGTIASLSNAAMYAGTTVGTSIAGFLYQSTQHFGAVTGFTAILFILSMTLYQTISKTGKRQSTARAQL

Sequences:

>Translated_390_residues
MNRIWLFFSVMFVIGTDTFLLSPLLPLLQDQFHVSTDLSGWMVSAYALGYALFAFIAGPISDRLNRKTVMLWGLAGFIVS
TFLCGIAPSFAAMCLFRFAAGVSAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAASQMLGLPIGGFLASFTWHTPFFV
LSACSLILLLILAAVMPGIRPSEPLARPSIVNPYRELFSLPKTSVILLAYFLFQTGNFASFSFLGTWLSADYHLTVSQIG
AAMLVLGLGNMLGSLIGSRVSEKLGMFKTLISGMLLMGALYFALPFFPNLFLVEAGFFLTFFTAGIIFPLMMGVFQSIAP
NARGTIASLSNAAMYAGTTVGTSIAGFLYQSTQHFGAVTGFTAILFILSMTLYQTISKTGKRQSTARAQL
>Mature_390_residues
MNRIWLFFSVMFVIGTDTFLLSPLLPLLQDQFHVSTDLSGWMVSAYALGYALFAFIAGPISDRLNRKTVMLWGLAGFIVS
TFLCGIAPSFAAMCLFRFAAGVSAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAASQMLGLPIGGFLASFTWHTPFFV
LSACSLILLLILAAVMPGIRPSEPLARPSIVNPYRELFSLPKTSVILLAYFLFQTGNFASFSFLGTWLSADYHLTVSQIG
AAMLVLGLGNMLGSLIGSRVSEKLGMFKTLISGMLLMGALYFALPFFPNLFLVEAGFFLTFFTAGIIFPLMMGVFQSIAP
NARGTIASLSNAAMYAGTTVGTSIAGFLYQSTQHFGAVTGFTAILFILSMTLYQTISKTGKRQSTARAQL

Specific function: May Be Involved In Either The Transport Or Processing Of Arabinose Polymers. [C]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCEJ_BACSU (O34724)

Other databases:

- EMBL:   AB000617
- EMBL:   AL009126
- PIR:   D69757
- RefSeq:   NP_388178.1
- ProteinModelPortal:   O34724
- EnsemblBacteria:   EBBACT00000003228
- GeneID:   938363
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU02960
- NMPDR:   fig|224308.1.peg.297
- GenoList:   BSU02960
- GeneTree:   EBGT00070000031967
- HOGENOM:   HBG340821
- OMA:   FLWMLTF
- ProtClustDB:   CLSK560982
- BioCyc:   BSUB:BSU02960-MONOMER
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001958
- PRINTS:   PR01035

Pfam domain/function: PF07690 MFS_1; SSF103473 MFS_gen_substrate_transporter

EC number: NA

Molecular weight: Translated: 41962; Mature: 41962

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb340e4c)-; HASH(0xbefe07c)-; HASH(0xbabf06c)-; HASH(0xcb3b80c)-; HASH(0xb4c6e50)-; HASH(0xafc4fc0)-; HASH(0xb395508)-; HASH(0xca2ab9c)-; HASH(0xbde7d20)-; HASH(0xcaeb5dc)-; HASH(0xc8fb1a4)-; HASH(0xc534ca4)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCCHHHHHHCCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCCHHHHHHCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377