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The map label for this gene is ybxI

Identifier: 16077278

GI number: 16077278

Start: 228549

End: 229352

Strand: Reverse

Name: ybxI

Synonym: BSU02090

Alternate gene names: 16077278

Gene position: 229352-228549 (Counterclockwise)

Preceding gene: 16077280

Following gene: 16077273

Centisome position: 5.44

GC content: 44.9

Gene sequence:

>804_bases
ATGAAAAAATGGATATATGTTGTGCTTGTGCTGAGTATTGCAGGGATCGGCGGCTTCTCCGTCCACGCAGCATCATCTGC
TCATGAAAAACACTTGAATGTCAGCAAAATGAATGTCGATGATGAATTCAAGGATACGGATGGAACCTTCATTCTTCACG
ATTTACAAAAGGATCAGACATTTGTCTATAACAGAAAACGGGCAAATCAAAGACAAACTCCGCAATCCACCTTTAAAGTC
GTGAACGCTTTAATCGGTTTGCAGGTCAAAGCTGTAAGAGATGAATACGATGTTAAACGATGGGACGGGGTCAAGCGTGA
ATTCGAATCATGGAACCGCGACCATACGCTTGGCTCGGCCATGCGCGAATCCGCAATCTGGTATTATCAGGCATTAGCGA
GAGATATCGGCGAGGAAAGAATGAAAACATGGCTTCATACTCTATCTTACGGCAACGAGGATATCAGCGGGGGAATCGAC
CAGTTTTGGCTGCAAAGCTCGCTCACAATATCTCCGCTGGAACAAGAAACTTTTTTGGAGAAACTGGCTAAAGAGGAGCT
TCCATTTGACAAGCCGGTGATGAAAATCGTCAAGCGCATGATGATTCAAGAGGAAGGCGATCATTACACGCTCTACGGGA
AAACCGGAACCCGCCTGACTGATATGGGATTAGGATGGTTTGTCGGATTCATCAAAACAGAGCATGGCTCTTATGTCTTT
GTCACCAATGTCGATGATTCCGGCACAAAAGCCAAAAACATCACCGTGGATATCCTGAAAAAGTATGGCCTGATTACATC
CTAA

Upstream 100 bases:

>100_bases
TGTTTGCAAAACCAAATTTAAGCGCTTTTTGATTATTTTTTAAAGGAAGAACAAACGAAAGAGAGAAAAGGTAGTTAATC
AAAACGAAGGGGAGAACAAA

Downstream 100 bases:

>100_bases
ATAAAAGAGCCCTGCACGGCAGGGCTCTAAATCTCATGCTCAAAACAATAATGATTCACAAGCTCTTCAATCAAATCATG
ATCGGGATATTCCCCGTTAA

Product: exported beta-lactamase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFKDTDGTFILHDLQKDQTFVYNRKRANQRQTPQSTFKV
VNALIGLQVKAVRDEYDVKRWDGVKREFESWNRDHTLGSAMRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGID
QFWLQSSLTISPLEQETFLEKLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTRLTDMGLGWFVGFIKTEHGSYVF
VTNVDDSGTKAKNITVDILKKYGLITS

Sequences:

>Translated_267_residues
MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFKDTDGTFILHDLQKDQTFVYNRKRANQRQTPQSTFKV
VNALIGLQVKAVRDEYDVKRWDGVKREFESWNRDHTLGSAMRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGID
QFWLQSSLTISPLEQETFLEKLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTRLTDMGLGWFVGFIKTEHGSYVF
VTNVDDSGTKAKNITVDILKKYGLITS
>Mature_267_residues
MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFKDTDGTFILHDLQKDQTFVYNRKRANQRQTPQSTFKV
VNALIGLQVKAVRDEYDVKRWDGVKREFESWNRDHTLGSAMRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGID
QFWLQSSLTISPLEQETFLEKLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTRLTDMGLGWFVGFIKTEHGSYVF
VTNVDDSGTKAKNITVDILKKYGLITS

Specific function: Unknown

COG id: COG2602

COG function: function code V; Beta-lactamase class D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-D beta-lactamase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBXI_BACSU (P54427)

Other databases:

- EMBL:   AB006424
- EMBL:   AL009126
- EMBL:   X92859
- PIR:   B69752
- RefSeq:   NP_388091.1
- ProteinModelPortal:   P54427
- SMR:   P54427
- EnsemblBacteria:   EBBACT00000001827
- GeneID:   938466
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU02090
- NMPDR:   fig|224308.1.peg.210
- GenoList:   BSU02090
- GeneTree:   EBGT00050000003470
- HOGENOM:   HBG345147
- OMA:   VYQEFAR
- ProtClustDB:   CLSK886603
- BioCyc:   BSUB:BSU02090-MONOMER
- BRENDA:   3.5.2.6
- InterPro:   IPR012338
- InterPro:   IPR002137
- InterPro:   IPR001460

Pfam domain/function: PF00905 Transpeptidase; SSF56601 PBP_transp_fold

EC number: =3.5.2.6

Molecular weight: Translated: 30644; Mature: 30644

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS00337 BETA_LACTAMASE_D

Important sites: ACT_SITE 76-76

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFKDTDGTFILHDLQKDQT
CCHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCEECCCCCCCCCCCCCEEEEECCCCCH
FVYNRKRANQRQTPQSTFKVVNALIGLQVKAVRDEYDVKRWDGVKREFESWNRDHTLGSA
HHHHHHHCCCCCCHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
MRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGIDQFWLQSSLTISPLEQETFLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEECCCHHHHHHH
KLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTRLTDMGLGWFVGFIKTEHGSYVF
HHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCHHHHHHEEEECCCCEEE
VTNVDDSGTKAKNITVDILKKYGLITS
EEECCCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKWIYVVLVLSIAGIGGFSVHAASSAHEKHLNVSKMNVDDEFKDTDGTFILHDLQKDQT
CCHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCEECCCCCCCCCCCCCEEEEECCCCCH
FVYNRKRANQRQTPQSTFKVVNALIGLQVKAVRDEYDVKRWDGVKREFESWNRDHTLGSA
HHHHHHHCCCCCCHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
MRESAIWYYQALARDIGEERMKTWLHTLSYGNEDISGGIDQFWLQSSLTISPLEQETFLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEECCCHHHHHHH
KLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTRLTDMGLGWFVGFIKTEHGSYVF
HHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEHHCCHHHHHHEEEECCCCEEE
VTNVDDSGTKAKNITVDILKKYGLITS
EEECCCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9016963