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The map label for this gene is ycnK [H]

Identifier: 15607022

GI number: 15607022

Start: 1441129

End: 1441695

Strand: Direct

Name: ycnK [H]

Synonym: aq_2049

Alternate gene names: 15607022

Gene position: 1441129-1441695 (Clockwise)

Preceding gene: 15607021

Following gene: 15607023

Centisome position: 92.9

GC content: 43.56

Gene sequence:

>567_bases
ATGTCTAAGGATAAGGAGAGGAGAAGGAAAATACTCCAGCTTTTGAAGGAAAGGGAAAGGACTCCTAAGGAACTTGCCAC
CGTATTCAACGTATCCCTGATGACGATTTACAGGGATATAAAGGAGCTTGAAAAGGAAGGTCTCGTTGAGAGAAAACACG
GAACCGTTTATCTGAAAAGGGAAACGGAGGACGGCAAGTGTGTTATATGTTCAAAGGAAGTGGACGAGAGGTTCAAGGTC
GTCTTCTTTTTAAAAGAGGATAAAAAAGTCTTTGCATGCTGTCCTCACTGTGGATTGATGGCTTTTAAAAAGCTCGGCCC
AAATATACAGTCCGCTCTGATGAGGGACTTTATAAGCTGTAATCCCGTTAACGCCTTTACGAGCTGGTACGTGGTTGGAG
CGGACATAAACCCTTGTTGCAGTCCTTCCGCCTTTTCCTTCAGTGCAAAGTACAACGCAGAACGTTTCGCCCAAGGGTTC
GGAGGAAAGGTTTTGAACTTTGAAGACGCTGTTGAGGAAATAAACAGACTCATGAGCTTTGGAACGAGAGTAAAATTTAA
CTTATAA

Upstream 100 bases:

>100_bases
AGTAAGGTGCATAGCGGTGGACGAGGAAAGGGCAAGGGTGGAGTTTGAACTGATAGAAAAGCTTGAAAAACACGAAACCT
TATGAAAATTTTATAAATAA

Downstream 100 bases:

>100_bases
TGGCTACGGACTACCAAACCATCTACATACTGGGCGGGGGGATGCTTCTACAGGAGAGGAAGCTGGACGTTTCTACAAAC
AACATGGCAAACGTAAACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSKDKERRRKILQLLKERERTPKELATVFNVSLMTIYRDIKELEKEGLVERKHGTVYLKRETEDGKCVICSKEVDERFKV
VFFLKEDKKVFACCPHCGLMAFKKLGPNIQSALMRDFISCNPVNAFTSWYVVGADINPCCSPSAFSFSAKYNAERFAQGF
GGKVLNFEDAVEEINRLMSFGTRVKFNL

Sequences:

>Translated_188_residues
MSKDKERRRKILQLLKERERTPKELATVFNVSLMTIYRDIKELEKEGLVERKHGTVYLKRETEDGKCVICSKEVDERFKV
VFFLKEDKKVFACCPHCGLMAFKKLGPNIQSALMRDFISCNPVNAFTSWYVVGADINPCCSPSAFSFSAKYNAERFAQGF
GGKVLNFEDAVEEINRLMSFGTRVKFNL
>Mature_187_residues
SKDKERRRKILQLLKERERTPKELATVFNVSLMTIYRDIKELEKEGLVERKHGTVYLKRETEDGKCVICSKEVDERFKVV
FFLKEDKKVFACCPHCGLMAFKKLGPNIQSALMRDFISCNPVNAFTSWYVVGADINPCCSPSAFSFSAKYNAERFAQGFG
GKVLNFEDAVEEINRLMSFGTRVKFNL

Specific function: May act as a negative transcriptional regulator of ycnJ in the presence of copper. May use copper as a corepressor [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR008719
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR; PF05573 NosL [H]

EC number: NA

Molecular weight: Translated: 21631; Mature: 21500

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDKERRRKILQLLKERERTPKELATVFNVSLMTIYRDIKELEKEGLVERKHGTVYLKR
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEE
ETEDGKCVICSKEVDERFKVVFFLKEDKKVFACCPHCGLMAFKKLGPNIQSALMRDFISC
ECCCCCEEEECCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCC
NPVNAFTSWYVVGADINPCCSPSAFSFSAKYNAERFAQGFGGKVLNFEDAVEEINRLMSF
CCCCHHHEEEEECCCCCCCCCCCCCEEECCCCHHHHHHCCCCCEECHHHHHHHHHHHHHC
GTRVKFNL
CCCEEECC
>Mature Secondary Structure 
SKDKERRRKILQLLKERERTPKELATVFNVSLMTIYRDIKELEKEGLVERKHGTVYLKR
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCEEEEEE
ETEDGKCVICSKEVDERFKVVFFLKEDKKVFACCPHCGLMAFKKLGPNIQSALMRDFISC
ECCCCCEEEECCCCCCCEEEEEEEECCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCC
NPVNAFTSWYVVGADINPCCSPSAFSFSAKYNAERFAQGFGGKVLNFEDAVEEINRLMSF
CCCCHHHEEEEECCCCCCCCCCCCCEEECCCCHHHHHHCCCCCEECHHHHHHHHHHHHHC
GTRVKFNL
CCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]