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The map label for this gene is ppdD2

Identifier: 15606610

GI number: 15606610

Start: 1020328

End: 1020765

Strand: Direct

Name: ppdD2

Synonym: aq_1434

Alternate gene names: NA

Gene position: 1020328-1020765 (Clockwise)

Preceding gene: 15606609

Following gene: 15606611

Centisome position: 65.77

GC content: 38.58

Gene sequence:

>438_bases
GTGATAGTACTTTTTAAAAGGGGATTCACCCTTGTAGAACTTTTAATAGTAATAGGAATAATAGTTATTTTAAGTACAGT
GGGGATTTTAAAATTCAGGGAGTGGTACGAAAACTACAAATACCTTGAGGAAGTATCAAAACTCGAATACTTGGTTAGGA
GGGCTAAGGTAATAGCCCTTGAGCGTTCTTCTTACGTAAAAGTGCGTGTTAATGGAAATAATTTAGTAATAGAAGATTGC
GGAATAGACAACTCCTCCTGTACTCCCGTGGCTTCTTACAGATTTGAGTTTAACTTGGATTCGACCAGATCTGTGACTTT
CAGTCCGAGGGGCTTGGCACATTCATGGGGAAGCTTCTGTATTTCAAAAGATGGAATGTCGTACAAGGTTATAGTAAACA
GGGAAGGTATAAGGGTAGAAAAAGGAGGAACGTGTTGA

Upstream 100 bases:

>100_bases
AGACTTCTTTCGGATAACCCTATAACCATAGAAGCTGTAGGAAGGAGTGATGTGGGAGAGGTCAGGTGTACCTATGACGG
AAACACCGGAGAGATAAGCT

Downstream 100 bases:

>100_bases
AAAAAGGATTTACACTGATAGAGGTTCTCGTAGCATTGCTCGTTTTTATAATCGGCGTGGGGAGTATATTCTACGTTTTT
TCTAAATTTTCCGATTTAAT

Product: pilin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MIVLFKRGFTLVELLIVIGIIVILSTVGILKFREWYENYKYLEEVSKLEYLVRRAKVIALERSSYVKVRVNGNNLVIEDC
GIDNSSCTPVASYRFEFNLDSTRSVTFSPRGLAHSWGSFCISKDGMSYKVIVNREGIRVEKGGTC

Sequences:

>Translated_145_residues
MIVLFKRGFTLVELLIVIGIIVILSTVGILKFREWYENYKYLEEVSKLEYLVRRAKVIALERSSYVKVRVNGNNLVIEDC
GIDNSSCTPVASYRFEFNLDSTRSVTFSPRGLAHSWGSFCISKDGMSYKVIVNREGIRVEKGGTC
>Mature_145_residues
MIVLFKRGFTLVELLIVIGIIVILSTVGILKFREWYENYKYLEEVSKLEYLVRRAKVIALERSSYVKVRVNGNNLVIEDC
GIDNSSCTPVASYRFEFNLDSTRSVTFSPRGLAHSWGSFCISKDGMSYKVIVNREGIRVEKGGTC

Specific function: Unknown

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16485; Mature: 16485

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLFKRGFTLVELLIVIGIIVILSTVGILKFREWYENYKYLEEVSKLEYLVRRAKVIAL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
ERSSYVKVRVNGNNLVIEDCGIDNSSCTPVASYRFEFNLDSTRSVTFSPRGLAHSWGSFC
ECCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCEE
ISKDGMSYKVIVNREGIRVEKGGTC
EECCCCEEEEEEECCCEEECCCCCC
>Mature Secondary Structure
MIVLFKRGFTLVELLIVIGIIVILSTVGILKFREWYENYKYLEEVSKLEYLVRRAKVIAL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
ERSSYVKVRVNGNNLVIEDCGIDNSSCTPVASYRFEFNLDSTRSVTFSPRGLAHSWGSFC
ECCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCEE
ISKDGMSYKVIVNREGIRVEKGGTC
EECCCCEEEEEEECCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA