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The map label for this gene is rlpA2 [C]

Identifier: 15606419

GI number: 15606419

Start: 825286

End: 825966

Strand: Direct

Name: rlpA2 [C]

Synonym: aq_1174

Alternate gene names: 15606419

Gene position: 825286-825966 (Clockwise)

Preceding gene: 15606418

Following gene: 15606420

Centisome position: 53.2

GC content: 43.61

Gene sequence:

>681_bases
ATGGAAAGATTTCTGGGTTTTAGAACTCCTCTTGGAGCCCTCGGTGTTGTAATACTCTTAACACTCATTCTTTCCAGCTG
TAGTGTAAAAACCTCATACAAAGAAAAGGGTAGAGTTTACAACGGCAAATGTCCAGAATATGCAAAAGTATGGGTTCATT
ACTGCCCAACGAAATACGCTTACACGGACAGGTATCAGCACCTCAGTAAGGTAAAAATCGTAAATCCCAGAAACGGAAAA
AGTGTAAAAATATCACTCAGACTTAACAAAAAGGTTAGGGGTATATGCCTACCTAAGAGGCTGAAGAAGTACTTAGGAAA
GCCCTTTCTGGGAAAGGTTTATCTTCTAAGATGCGGAGAAAACGGCGTAAAGAAGTGTCCGAAGTACATAAGGGGATACG
CCTCGTGGTACGGAGGAAAGTTCCACGGGAGGAAAACTGCTTCGGGAATAAGGTTCAATCAACACGAGTATTACGCAGCT
CACAGGTACTTGCCATTCGGAACACTCCTTGAAGTTAAAAATTTAAAAAACGGCAGAAAGGTGATTGTTAAAGTCGTGGA
CAGGGGACCCTACGTCAGGGGAAGGCACCTTGACCTTTCTTACGCAGCAGCTAAAAAGCTGGGTATGATAAGGGACGGTG
TAATTCCCTTTGAGGCGAAAGTGCTCAGGTGTGGTTACTGA

Upstream 100 bases:

>100_bases
GACACCTTCCCAATCTCGCCCGCTTGTTTTCCTTACTTTATCTGTCTGAAGACAACGAAAGAAGGGTTAATTTATCCACA
TCTGGAGCTTTAGTTCTCAA

Downstream 100 bases:

>100_bases
AAAAGGTGTATATTTAAACTTGTTAAGATGTGCGGAGTTGCAGGAGTCTTTAATTCCCCTTACGCAGCGGAATATGCCCT
TTTAATGATTTACTCACTCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYAYTDRYQHLSKVKIVNPRNGK
SVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGENGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAA
HRYLPFGTLLEVKNLKNGRKVIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY

Sequences:

>Translated_226_residues
MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYAYTDRYQHLSKVKIVNPRNGK
SVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGENGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAA
HRYLPFGTLLEVKNLKNGRKVIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY
>Mature_226_residues
MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYAYTDRYQHLSKVKIVNPRNGK
SVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGENGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAA
HRYLPFGTLLEVKNLKNGRKVIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RLPA_AQUAE (O67235)

Other databases:

- EMBL:   AE000657
- PIR:   H70400
- RefSeq:   NP_213799.1
- ProteinModelPortal:   O67235
- SMR:   O67235
- GeneID:   1192581
- GenomeReviews:   AE000657_GR
- KEGG:   aae:aq_1174
- NMPDR:   fig|224324.1.peg.814
- ProtClustDB:   CLSK2748423
- BioCyc:   AAEO224324:AQ_1174-MONOMER
- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- Gene3D:   G3DSA:2.40.40.10
- TIGRFAMs:   TIGR00413

Pfam domain/function: PF03330 DPBB_1; SSF50685 Barwin_like

EC number: NA

Molecular weight: Translated: 25857; Mature: 25857

Theoretical pI: Translated: 10.76; Mature: 10.76

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYA
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEECCCCCHHHHHHHHCCCCCCH
YTDRYQHLSKVKIVNPRNGKSVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGE
HHHHHHHHHEEEEECCCCCCEEEEEEEECCCCCCEECHHHHHHHHCCCCCCEEEEEEECC
NGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHCCCCHHHHHHHHCCCCCCE
VIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHEEEECCC
>Mature Secondary Structure
MERFLGFRTPLGALGVVILLTLILSSCSVKTSYKEKGRVYNGKCPEYAKVWVHYCPTKYA
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCEECCCCCHHHHHHHHCCCCCCH
YTDRYQHLSKVKIVNPRNGKSVKISLRLNKKVRGICLPKRLKKYLGKPFLGKVYLLRCGE
HHHHHHHHHEEEEECCCCCCEEEEEEEECCCCCCEECHHHHHHHHCCCCCCEEEEEEECC
NGVKKCPKYIRGYASWYGGKFHGRKTASGIRFNQHEYYAAHRYLPFGTLLEVKNLKNGRK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHCCCCHHHHHHHHCCCCCCE
VIVKVVDRGPYVRGRHLDLSYAAAKKLGMIRDGVIPFEAKVLRCGY
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320