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The map label for this gene is yggS [C]

Identifier: 15605814

GI number: 15605814

Start: 177613

End: 178299

Strand: Direct

Name: yggS [C]

Synonym: aq_274

Alternate gene names: 15605814

Gene position: 177613-178299 (Clockwise)

Preceding gene: 15605813

Following gene: 15605819

Centisome position: 11.45

GC content: 46.0

Gene sequence:

>687_bases
ATGAACGCCTGTGAGAGGTTATCCCGCGTCCTTGAGAGAATTCAGAAAGCCTGCGAGAGAGCGGGAAGGGGTGAGAACTG
TGCGAAACTTCTAGGAGCTTCTAAGACCGTACCTCCAGAAGTTATAAGGGAGTTTTATAACTGCGGACTGAAGGTTTACG
GAGAAAACAGGGTTCAGGAGTTCCTCAAAAAGTATGAAGCCCTAAAAGATTTAGACTTAGAGTGGCACTTCATAGGGAGA
CTCCAGACGAATAAAGTGAAGTACCTTATGGGTAAAGTCGTCTTAATCCACTCCCTTGACAGGAAGAACCTCGCGGACGA
AATACAAAAAAGAGCCTTTAAAAACAACATAGTTCAGGACGTTTTAATAGAGGTAAACGTGGGAGGCGAAGAAACGAAGG
GAGGAGTAGAGCCCGAGAACTTAAAGGAACTCTTTGAGTACACTTTAGAACTTCCCAATGTAAAGGTTCTCGGACTCATG
ACCATACCTCCGTATCTTGAAAATCCCGAAGATGTCAGACCTTACTTCAGAAAACTCAGGGAACTGAGGGACGAGCTCCA
AAGGGAGTACAACGTTGCACTTCCTCACCTCTCCATGGGAATGTCCCACGACTTTGAGGTTGCGATTGAAGAGGGTGCAA
CTATCGTGAGAATAGGCACTTTGCTCTTCGGGGAGAGGAAGTATTGA

Upstream 100 bases:

>100_bases
ACAGTTCCCACCGAGAGACTCCTTGAGGCTGCGGAAAGAATTAAAAATTTAAAACTGTAATCTCCCTTTCTCCTTTTCCT
TTCTTTTAAGATTAAATCTT

Downstream 100 bases:

>100_bases
AACTAAAGTACAAGATATGGTTTGAGATAGACGGAGAGCCCGTAATAACGAAGTTAAAGTATGAGCTTCTTAAAAATATA
GAAAAGACAAAGTCAATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGR
LQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLM
TIPPYLENPEDVRPYFRKLRELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGERKY

Sequences:

>Translated_228_residues
MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGR
LQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLM
TIPPYLENPEDVRPYFRKLRELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGERKY
>Mature_228_residues
MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQEFLKKYEALKDLDLEWHFIGR
LQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQDVLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLM
TIPPYLENPEDVRPYFRKLRELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGERKY

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family

Homologues:

Organism=Homo sapiens, GI6005842, Length=236, Percent_Identity=36.4406779661017, Blast_Score=132, Evalue=2e-31,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=37.0212765957447, Blast_Score=137, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI17533025, Length=233, Percent_Identity=33.0472103004292, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6319435, Length=219, Percent_Identity=37.4429223744292, Blast_Score=100, Evalue=2e-22,
Organism=Drosophila melanogaster, GI45550861, Length=236, Percent_Identity=31.7796610169492, Blast_Score=115, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y274_AQUAE (O66631)

Other databases:

- EMBL:   AE000657
- PIR:   C70325
- RefSeq:   NP_213191.1
- ProteinModelPortal:   O66631
- SMR:   O66631
- GeneID:   1192865
- GenomeReviews:   AE000657_GR
- KEGG:   aae:aq_274
- NMPDR:   fig|224324.1.peg.206
- HOGENOM:   HBG289671
- OMA:   VNIGREE
- PhylomeDB:   O66631
- ProtClustDB:   CLSK790135
- BioCyc:   AAEO224324:AQ_274-MONOMER
- InterPro:   IPR001608
- InterPro:   IPR011078
- PANTHER:   PTHR10146
- PIRSF:   PIRSF004848
- TIGRFAMs:   TIGR00044

Pfam domain/function: PF01168 Ala_racemase_N

EC number: NA

Molecular weight: Translated: 26340; Mature: 26340

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQE
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHCCEEEECCHHHHH
FLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQD
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLMTIPPYLENPEDVRPYFRKLR
HHEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
ELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGERKY
HHHHHHHHHHHCCCCHHHCCCCCCCEEHHHCCCEEEEEHHHHHCCCCC
>Mature Secondary Structure
MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQE
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHCCEEEECCHHHHH
FLKKYEALKDLDLEWHFIGRLQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQD
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLMTIPPYLENPEDVRPYFRKLR
HHEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH
ELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGERKY
HHHHHHHHHHHCCCCHHHCCCCCCCEEHHHCCCEEEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320