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The map label for this gene is trnS [C]

Identifier: 15605634

GI number: 15605634

Start: 18275

End: 19615

Strand: Direct

Name: trnS [C]

Synonym: aq_031

Alternate gene names: 15605634

Gene position: 18275-19615 (Clockwise)

Preceding gene: 15605633

Following gene: 15605635

Centisome position: 1.18

GC content: 46.09

Gene sequence:

>1341_bases
ATGAATAAAAACGTATTTCTCGTTTTAGCCATTTTAGTTTTCTTCGGTGTCTTAATAACCTCCCCTTTCGAAGGGAACGT
CAACAAAGGCATAGCAATTCTCCTGCTCGCCGCAATTCTTTGGATTACCGAGGCTCTTCCCCTTCCCGTTACGGCACTCC
TCATTCCCGTGAGCGGTGTTCTCTTAGGAGTTTTTGACGTAAAGACCGCACTTTCCTACTTTGCTCACCCGCTTATATTC
CTCTTTTTCGGAGGATTCGTTCTCGCTGTAGCCCTTTCAAAGTACCAGATAGACGAGTACATAGCCCATAAAATAGTCTC
CGTAGCTCAAGGAAAGTTCCTGCCTTCAGTTTTCCTGCTAATGCTTGCAACTTCCCTTATTTCCATGTGGATCAGTAACA
CCTCAACTACAGCGATGATGCTTCCCCTCGCCCTCGGGATACTGGCGGGAGTAAGGGAAACGGAAAGGGAAAAGGTATTT
CCCTTCGTACTTCTTGGTATAGCCTACTCTGCGAGCGTAGGAGGGATAGGAACGCTTGTGGGAAGTCCACCAAACGGTAT
AGCGGCGGGGATACTCGGACTGTCTTTCCCCGACTGGCTCAAGTTCGGAATTCCCGTATTTTTAATACTCTTTCCCTTGC
TCTTCGCAATACTGTTTTTAGTCTTCAGACCTACCTCTGACCTGAAAGTTGAAAGAGTTCAGGAAATTAAGTTTGAGTTC
ACTCCGCAAAGAGTTCTGGTTCTTCTCATCTTCCTCTTTACCGCCCTTGCGTGGATTTTCAGCAAGAAAATAGCCCCTAT
TTTTGAAGTGAAAAAGTACTTTGACACGGTTGTGGCACTCCTCGCGGTAGTAGCACTATTTATTTTCAGGCTCCTTGACT
GGAGGGACGTAAAAGAGGGTGTATCCTGGGGAACGCTTCTTCTCTTTGGTGGTGGTATAGCCCTGAGTGGTATTATGAAG
AAAACAGGAACAGCCAAGTTTATTTCTCAGGAACTCGTAGACGTCCTGCACGGACTCCCTACATTTCTGTTTCTCCTCAC
TATAGTTCTTTTCGTTATATTCCTCACGGAACTAATGAGTAACACAGCAACAACCGCACTTATCGCCCCTATACTCTTTT
CAACGGCTCAGATGATAGGTAAACCCCCCGAAATGCTCGTGATTCCCGCCGCGGTTGCCGCATCTTGTGCTTTCATGCTT
CCCGTTGCAACACCTCCGAACGCAATCGTTTACGGAACGGGTTACATAAAACAATCCCAAATGATGAGGGTAGGTCTTAT
CTTGAATATCGTATTTAGTATTGTTTTAGCCGCTTTCTTTACAGTGTACGTGGGAGGTTGA

Upstream 100 bases:

>100_bases
CTTGTTAACTCAAACGCCTACATGGTAGTTTACGAAGGCGTGAACGAGCTGAAGAAGGGGCAGGAGGTGGAAGTTATACT
TTTCTAAGGGAGGGCAAAAG

Downstream 100 bases:

>100_bases
GAAAATGGGACTGAAGGAAAAACTTATCAGAAAAGGTAAATACATATGGGAACTGCCAAAAGAAACGATAGAAGGTCAAA
GAGTACCCGTAATTCTTTAC

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MNKNVFLVLAILVFFGVLITSPFEGNVNKGIAILLLAAILWITEALPLPVTALLIPVSGVLLGVFDVKTALSYFAHPLIF
LFFGGFVLAVALSKYQIDEYIAHKIVSVAQGKFLPSVFLLMLATSLISMWISNTSTTAMMLPLALGILAGVRETEREKVF
PFVLLGIAYSASVGGIGTLVGSPPNGIAAGILGLSFPDWLKFGIPVFLILFPLLFAILFLVFRPTSDLKVERVQEIKFEF
TPQRVLVLLIFLFTALAWIFSKKIAPIFEVKKYFDTVVALLAVVALFIFRLLDWRDVKEGVSWGTLLLFGGGIALSGIMK
KTGTAKFISQELVDVLHGLPTFLFLLTIVLFVIFLTELMSNTATTALIAPILFSTAQMIGKPPEMLVIPAAVAASCAFML
PVATPPNAIVYGTGYIKQSQMMRVGLILNIVFSIVLAAFFTVYVGG

Sequences:

>Translated_446_residues
MNKNVFLVLAILVFFGVLITSPFEGNVNKGIAILLLAAILWITEALPLPVTALLIPVSGVLLGVFDVKTALSYFAHPLIF
LFFGGFVLAVALSKYQIDEYIAHKIVSVAQGKFLPSVFLLMLATSLISMWISNTSTTAMMLPLALGILAGVRETEREKVF
PFVLLGIAYSASVGGIGTLVGSPPNGIAAGILGLSFPDWLKFGIPVFLILFPLLFAILFLVFRPTSDLKVERVQEIKFEF
TPQRVLVLLIFLFTALAWIFSKKIAPIFEVKKYFDTVVALLAVVALFIFRLLDWRDVKEGVSWGTLLLFGGGIALSGIMK
KTGTAKFISQELVDVLHGLPTFLFLLTIVLFVIFLTELMSNTATTALIAPILFSTAQMIGKPPEMLVIPAAVAASCAFML
PVATPPNAIVYGTGYIKQSQMMRVGLILNIVFSIVLAAFFTVYVGG
>Mature_446_residues
MNKNVFLVLAILVFFGVLITSPFEGNVNKGIAILLLAAILWITEALPLPVTALLIPVSGVLLGVFDVKTALSYFAHPLIF
LFFGGFVLAVALSKYQIDEYIAHKIVSVAQGKFLPSVFLLMLATSLISMWISNTSTTAMMLPLALGILAGVRETEREKVF
PFVLLGIAYSASVGGIGTLVGSPPNGIAAGILGLSFPDWLKFGIPVFLILFPLLFAILFLVFRPTSDLKVERVQEIKFEF
TPQRVLVLLIFLFTALAWIFSKKIAPIFEVKKYFDTVVALLAVVALFIFRLLDWRDVKEGVSWGTLLLFGGGIALSGIMK
KTGTAKFISQELVDVLHGLPTFLFLLTIVLFVIFLTELMSNTATTALIAPILFSTAQMIGKPPEMLVIPAAVAASCAFML
PVATPPNAIVYGTGYIKQSQMMRVGLILNIVFSIVLAAFFTVYVGG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SLC13A transporter (TC 2.A.47) family. NADC subfamily [H]

Homologues:

Organism=Homo sapiens, GI29171306, Length=511, Percent_Identity=30.9197651663405, Blast_Score=175, Evalue=6e-44,
Organism=Homo sapiens, GI31377715, Length=531, Percent_Identity=29.7551789077213, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI301069349, Length=498, Percent_Identity=30.3212851405622, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI58761541, Length=515, Percent_Identity=30.0970873786408, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI301069353, Length=465, Percent_Identity=29.247311827957, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI219802232, Length=446, Percent_Identity=28.47533632287, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI19923838, Length=357, Percent_Identity=31.0924369747899, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4506979, Length=147, Percent_Identity=40.8163265306122, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI225637552, Length=147, Percent_Identity=40.8163265306122, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI225637549, Length=147, Percent_Identity=40.8163265306122, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI301069346, Length=147, Percent_Identity=37.4149659863946, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI31795546, Length=336, Percent_Identity=26.1904761904762, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988385, Length=474, Percent_Identity=30.379746835443, Blast_Score=172, Evalue=5e-43,
Organism=Caenorhabditis elegans, GI32565804, Length=445, Percent_Identity=30.561797752809, Blast_Score=161, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI17551790, Length=505, Percent_Identity=27.9207920792079, Blast_Score=154, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI71989118, Length=479, Percent_Identity=25.678496868476, Blast_Score=134, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI32564681, Length=506, Percent_Identity=25.296442687747, Blast_Score=133, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6324340, Length=410, Percent_Identity=27.3170731707317, Blast_Score=111, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6322263, Length=400, Percent_Identity=24.25, Blast_Score=96, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6319885, Length=458, Percent_Identity=24.0174672489083, Blast_Score=95, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281366409, Length=488, Percent_Identity=28.4836065573771, Blast_Score=148, Evalue=6e-36,
Organism=Drosophila melanogaster, GI17737623, Length=488, Percent_Identity=28.4836065573771, Blast_Score=148, Evalue=6e-36,
Organism=Drosophila melanogaster, GI24666468, Length=488, Percent_Identity=28.4836065573771, Blast_Score=148, Evalue=6e-36,
Organism=Drosophila melanogaster, GI45551633, Length=488, Percent_Identity=28.4836065573771, Blast_Score=148, Evalue=9e-36,
Organism=Drosophila melanogaster, GI281362116, Length=474, Percent_Identity=27.2151898734177, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI281362114, Length=474, Percent_Identity=27.0042194092827, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI281362112, Length=474, Percent_Identity=27.0042194092827, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI78706796, Length=483, Percent_Identity=26.7080745341615, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI78706798, Length=483, Percent_Identity=26.7080745341615, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898 [H]

Pfam domain/function: PF00939 Na_sulph_symp [H]

EC number: NA

Molecular weight: Translated: 48410; Mature: 48410

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS01271 NA_SULFATE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNVFLVLAILVFFGVLITSPFEGNVNKGIAILLLAAILWITEALPLPVTALLIPVSGV
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLGVFDVKTALSYFAHPLIFLFFGGFVLAVALSKYQIDEYIAHKIVSVAQGKFLPSVFLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MLATSLISMWISNTSTTAMMLPLALGILAGVRETEREKVFPFVLLGIAYSASVGGIGTLV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCC
GSPPNGIAAGILGLSFPDWLKFGIPVFLILFPLLFAILFLVFRPTSDLKVERVQEIKFEF
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
TPQRVLVLLIFLFTALAWIFSKKIAPIFEVKKYFDTVVALLAVVALFIFRLLDWRDVKEG
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VSWGTLLLFGGGIALSGIMKKTGTAKFISQELVDVLHGLPTFLFLLTIVLFVIFLTELMS
CCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTATTALIAPILFSTAQMIGKPPEMLVIPAAVAASCAFMLPVATPPNAIVYGTGYIKQSQ
CHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHEECCCCCCEEEEECCCHHHHH
MMRVGLILNIVFSIVLAAFFTVYVGG
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKNVFLVLAILVFFGVLITSPFEGNVNKGIAILLLAAILWITEALPLPVTALLIPVSGV
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LLGVFDVKTALSYFAHPLIFLFFGGFVLAVALSKYQIDEYIAHKIVSVAQGKFLPSVFLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
MLATSLISMWISNTSTTAMMLPLALGILAGVRETEREKVFPFVLLGIAYSASVGGIGTLV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCC
GSPPNGIAAGILGLSFPDWLKFGIPVFLILFPLLFAILFLVFRPTSDLKVERVQEIKFEF
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
TPQRVLVLLIFLFTALAWIFSKKIAPIFEVKKYFDTVVALLAVVALFIFRLLDWRDVKEG
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VSWGTLLLFGGGIALSGIMKKTGTAKFISQELVDVLHGLPTFLFLLTIVLFVIFLTELMS
CCHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTATTALIAPILFSTAQMIGKPPEMLVIPAAVAASCAFMLPVATPPNAIVYGTGYIKQSQ
CHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHEECCCCCCEEEEECCCHHHHH
MMRVGLILNIVFSIVLAAFFTVYVGG
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]