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The map label for this gene is rtcB [C]

Identifier: 15605635

GI number: 15605635

Start: 19620

End: 21062

Strand: Direct

Name: rtcB [C]

Synonym: aq_032

Alternate gene names: 15605635

Gene position: 19620-21062 (Clockwise)

Preceding gene: 15605634

Following gene: 15605637

Centisome position: 1.26

GC content: 49.2

Gene sequence:

>1443_bases
ATGGGACTGAAGGAAAAACTTATCAGAAAAGGTAAATACATATGGGAACTGCCAAAAGAAACGATAGAAGGTCAAAGAGT
ACCCGTAATTCTTTACCTGAGCGACGCCCTCTTTGAACTCCTTGAAGAAGATGCCCTAAGACAGGCTGCAAACGCCGCAA
CTCTTCCGGGAGTGGAAAAGGCTATTTACGTGATGCCGGACGTTCACGTGGGGTACGGCTTTCCCGTGGGAGGGGTAATG
GCCACGAATACGGAAACAGGTATAATAAGTCCCGGTTCAATCGGTTATGACATCAACTGCGGTGTCCGTCTAATAGCGAC
AAACTTAAAAGCGGTGGATGTAGCACCCAGAATAAAGGAAATAATGAACAACATGCTAAAAAACGTTCCCGCAGGTGTTG
GCTCCACGAGCGAGATAAAACTCTCTAAATCCCAGATGAAGGAAGTGCTCGTAAAGGGAGCAGGCTGGGCGGTTGAACAC
GGCTTTGGTTTTCCCGAGGATCTTCAGCACATAGAGGGCTTCGGTGCTCTTCCGAACGCAGATCCCGAAAAGGCTTCTCA
CGAGGCCTACGAGAGGGGTTCGGACGAACTCGGAACTGTCGGAAGCGGGAACCACTTTGTGGAAGTTCAGGCGGTAGAAC
AGATATACGAGCCTGAAATTGCGGAAAAGCTCGGTATATGGGAAGGACAGGTAATGGTTATGGTTCACTCTGGTTCGAGG
GGTTTCGGTCATCAGGTCTGCACGGATTACCTCAGGGTAGCCTTGAAAGTGAGGGATAAGTACAAAATCAAACTCCCTGA
TCCCCAACTTGCGTGTATGCCCTTCAACTCTCCCGAAGGACAGGCTTACTTCAAGGCTATGAACGCCGCGGCAAATTACG
CCTTTGCAAACAGACAGATCCTCGGTTTTAAAGCTGCGAACACGGTCAGGAAAACTCTCGGCATTTCGTGGGAAGAGTTC
GGCTACAGGCTCATATACGATCACGCTCACAATATAGGAAAGGTGGAAAAACACGAAGTAGACGGAAAAAAGGTCGAAGT
AATAGTTCACAGGAAAGGGGCAACGAGAGCTTTTCCTCCTTACAACCCCGAAGTTCCCCCCGCTTACAGGGAAGTAGGAC
AACCCGTGATAATTCCGGGAGACATGGGAAGGGCTTCCTTCCTGCTCGTGGGACAGACCAACTCTATGAAGATGTCCTTC
GGGACTGCGTGCCACGGCGCGGGAAGAGTTATGTCAAGAAGACAGGCAAAGAAGTACGTAAAAGAAGTAGGACTTGAAAA
GGTAATAGGTAACCTCGTAGTAGTTGCAAGGGGTAAAGGAACAATAATGGAAGAAATCCCCCAGGCGTACAAGGACGTGA
CGGAAGTCGTAAGGGTTATAGATGAACTGGGAATAGCCAAAGCGGTGGCTAGGTTAAAACCCCTCGGAACGCTAAAGGGT
TAA

Upstream 100 bases:

>100_bases
ATAAAACAATCCCAAATGATGAGGGTAGGTCTTATCTTGAATATCGTATTTAGTATTGTTTTAGCCGCTTTCTTTACAGT
GTACGTGGGAGGTTGAGAAA

Downstream 100 bases:

>100_bases
GCTTTCCCTGAACACTTCCACCCTGTTCTTTCCCTTTCTCTTCGCCTCGTACAGTGCCTGATCCGCTTCCTTTATCAACT
CTTCCAAGCTCTCGTGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MGLKEKLIRKGKYIWELPKETIEGQRVPVILYLSDALFELLEEDALRQAANAATLPGVEKAIYVMPDVHVGYGFPVGGVM
ATNTETGIISPGSIGYDINCGVRLIATNLKAVDVAPRIKEIMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEH
GFGFPEDLQHIEGFGALPNADPEKASHEAYERGSDELGTVGSGNHFVEVQAVEQIYEPEIAEKLGIWEGQVMVMVHSGSR
GFGHQVCTDYLRVALKVRDKYKIKLPDPQLACMPFNSPEGQAYFKAMNAAANYAFANRQILGFKAANTVRKTLGISWEEF
GYRLIYDHAHNIGKVEKHEVDGKKVEVIVHRKGATRAFPPYNPEVPPAYREVGQPVIIPGDMGRASFLLVGQTNSMKMSF
GTACHGAGRVMSRRQAKKYVKEVGLEKVIGNLVVVARGKGTIMEEIPQAYKDVTEVVRVIDELGIAKAVARLKPLGTLKG

Sequences:

>Translated_480_residues
MGLKEKLIRKGKYIWELPKETIEGQRVPVILYLSDALFELLEEDALRQAANAATLPGVEKAIYVMPDVHVGYGFPVGGVM
ATNTETGIISPGSIGYDINCGVRLIATNLKAVDVAPRIKEIMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEH
GFGFPEDLQHIEGFGALPNADPEKASHEAYERGSDELGTVGSGNHFVEVQAVEQIYEPEIAEKLGIWEGQVMVMVHSGSR
GFGHQVCTDYLRVALKVRDKYKIKLPDPQLACMPFNSPEGQAYFKAMNAAANYAFANRQILGFKAANTVRKTLGISWEEF
GYRLIYDHAHNIGKVEKHEVDGKKVEVIVHRKGATRAFPPYNPEVPPAYREVGQPVIIPGDMGRASFLLVGQTNSMKMSF
GTACHGAGRVMSRRQAKKYVKEVGLEKVIGNLVVVARGKGTIMEEIPQAYKDVTEVVRVIDELGIAKAVARLKPLGTLKG
>Mature_479_residues
GLKEKLIRKGKYIWELPKETIEGQRVPVILYLSDALFELLEEDALRQAANAATLPGVEKAIYVMPDVHVGYGFPVGGVMA
TNTETGIISPGSIGYDINCGVRLIATNLKAVDVAPRIKEIMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEHG
FGFPEDLQHIEGFGALPNADPEKASHEAYERGSDELGTVGSGNHFVEVQAVEQIYEPEIAEKLGIWEGQVMVMVHSGSRG
FGHQVCTDYLRVALKVRDKYKIKLPDPQLACMPFNSPEGQAYFKAMNAAANYAFANRQILGFKAANTVRKTLGISWEEFG
YRLIYDHAHNIGKVEKHEVDGKKVEVIVHRKGATRAFPPYNPEVPPAYREVGQPVIIPGDMGRASFLLVGQTNSMKMSFG
TACHGAGRVMSRRQAKKYVKEVGLEKVIGNLVVVARGKGTIMEEIPQAYKDVTEVVRVIDELGIAKAVARLKPLGTLKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=490, Percent_Identity=41.2244897959184, Blast_Score=388, Evalue=1e-108,
Organism=Escherichia coli, GI2367224, Length=450, Percent_Identity=30.8888888888889, Blast_Score=152, Evalue=5e-38,
Organism=Caenorhabditis elegans, GI17506665, Length=488, Percent_Identity=40.5737704918033, Blast_Score=379, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24585217, Length=490, Percent_Identity=41.4285714285714, Blast_Score=369, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 52497; Mature: 52366

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKEKLIRKGKYIWELPKETIEGQRVPVILYLSDALFELLEEDALRQAANAATLPGVEK
CCHHHHHHHCCCCEEECCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCC
AIYVMPDVHVGYGFPVGGVMATNTETGIISPGSIGYDINCGVRLIATNLKAVDVAPRIKE
EEEECCCCEECCCCCCCCEEECCCCCCEECCCCCCEECCCCEEEEEECCHHCCCCHHHHH
IMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEHGFGFPEDLQHIEGFGALPNA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCCCCC
DPEKASHEAYERGSDELGTVGSGNHFVEVQAVEQIYEPEIAEKLGIWEGQVMVMVHSGSR
CCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHCCCCCEEEEEEECCCC
GFGHQVCTDYLRVALKVRDKYKIKLPDPQLACMPFNSPEGQAYFKAMNAAANYAFANRQI
CCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
LGFKAANTVRKTLGISWEEFGYRLIYDHAHNIGKVEKHEVDGKKVEVIVHRKGATRAFPP
EEEHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCHHHCCCCCEEEEEEEECCCCCCCCC
YNPEVPPAYREVGQPVIIPGDMGRASFLLVGQTNSMKMSFGTACHGAGRVMSRRQAKKYV
CCCCCCHHHHHCCCCEEEECCCCCEEEEEEECCCCEEEECCCHHCHHHHHHHHHHHHHHH
KEVGLEKVIGNLVVVARGKGTIMEEIPQAYKDVTEVVRVIDELGIAKAVARLKPLGTLKG
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GLKEKLIRKGKYIWELPKETIEGQRVPVILYLSDALFELLEEDALRQAANAATLPGVEK
CHHHHHHHCCCCEEECCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCC
AIYVMPDVHVGYGFPVGGVMATNTETGIISPGSIGYDINCGVRLIATNLKAVDVAPRIKE
EEEECCCCEECCCCCCCCEEECCCCCCEECCCCCCEECCCCEEEEEECCHHCCCCHHHHH
IMNNMLKNVPAGVGSTSEIKLSKSQMKEVLVKGAGWAVEHGFGFPEDLQHIEGFGALPNA
HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCCCCC
DPEKASHEAYERGSDELGTVGSGNHFVEVQAVEQIYEPEIAEKLGIWEGQVMVMVHSGSR
CCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHCCCCCEEEEEEECCCC
GFGHQVCTDYLRVALKVRDKYKIKLPDPQLACMPFNSPEGQAYFKAMNAAANYAFANRQI
CCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
LGFKAANTVRKTLGISWEEFGYRLIYDHAHNIGKVEKHEVDGKKVEVIVHRKGATRAFPP
EEEHHHHHHHHHHCCCHHHHCCEEEEECCCCCCCCHHHCCCCCEEEEEEEECCCCCCCCC
YNPEVPPAYREVGQPVIIPGDMGRASFLLVGQTNSMKMSFGTACHGAGRVMSRRQAKKYV
CCCCCCHHHHHCCCCEEEECCCCCEEEEEEECCCCEEEECCCHHCHHHHHHHHHHHHHHH
KEVGLEKVIGNLVVVARGKGTIMEEIPQAYKDVTEVVRVIDELGIAKAVARLKPLGTLKG
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]