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The map label for this gene is rpl18p

Identifier: 161511071

GI number: 161511071

Start: 1715965

End: 1716528

Strand: Reverse

Name: rpl18p

Synonym: AF1906

Alternate gene names: 161511071

Gene position: 1716528-1715965 (Counterclockwise)

Preceding gene: 11499491

Following gene: 11499489

Centisome position: 78.8

GC content: 51.77

Gene sequence:

>564_bases
TTGGCAAGAGGTCCGAGATACAAGGTTCCCCTCAGGAGAAGAAGAGAGGGTAAGACGAACTACAGGAAAAGACTTAAGCT
GCTCCTTTCAAGGAAGCCAAGACTGGTTGTGAGAATTACCAACAGGAGAGTCATCGCTCAGATTGTTGAGTACGCCCCAG
AAGGGGACAGAGTTGTTGTCGGTGTGGATTCAGCAATGCTGAGGGAATTTGGATGGAAAGGGGACCTGAACAACACCCCC
GCTGCCTACCTGACGGGCATTCTCATAGCCAAGAAAGCTTTGCAGAAGGGCATTGGCGAGGCTGTTCTGGACATCGGCCT
CCACACCCCGACGAGGGGCTCAAGGGTTTTTGCAGTGCTGAGAGGAGCGGTTGAAGGAGGGCTGGAAGTTCCTCACAGCG
ATGAGGTTCTGCCAGACGATTCGAGAATCAGGGGTGAGCACATTGCAGCCTACTACGAAATGAATCCCGAAAGGTTTGGT
GAGTACGAGAAGAGAGGTTTGAAGCCCTCAGATTTGCCCGCTCACGTTGATGAGATTAAGGAGAAGCTGATGGTGATATC
ATGA

Upstream 100 bases:

>100_bases
GGAGAACTTACAGAATCCTTTACAGAAAGGCGAAGGGTGGAGAGTTCAGGAGCGTTGCCCACCTTAAGATTTATGTTGAG
CAGATGAAGAGGTGATGAAG

Downstream 100 bases:

>100_bases
CCGAGGATTGGGTGCCGAAAACAAAGCTGGGGAGACTGGTTGCTGATGGAAAGATAAAGACAATGGATGAGGCTCTGGCC
AGCAATCTCCCGCTGAAGGA

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MARGPRYKVPLRRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTP
AAYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSRIRGEHIAAYYEMNPERFG
EYEKRGLKPSDLPAHVDEIKEKLMVIS

Sequences:

>Translated_187_residues
MARGPRYKVPLRRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTP
AAYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSRIRGEHIAAYYEMNPERFG
EYEKRGLKPSDLPAHVDEIKEKLMVIS
>Mature_186_residues
ARGPRYKVPLRRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPA
AYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSRIRGEHIAAYYEMNPERFGE
YEKRGLKPSDLPAHVDEIKEKLMVIS

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance [H]

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family [H]

Homologues:

Organism=Homo sapiens, GI14591909, Length=219, Percent_Identity=33.7899543378995, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17534333, Length=229, Percent_Identity=34.9344978165939, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6325126, Length=211, Percent_Identity=36.9668246445498, Blast_Score=111, Evalue=7e-26,
Organism=Drosophila melanogaster, GI116007384, Length=222, Percent_Identity=33.7837837837838, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI116007382, Length=222, Percent_Identity=33.7837837837838, Blast_Score=110, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005484
- InterPro:   IPR005485 [H]

Pfam domain/function: PF00861 Ribosomal_L18p [H]

EC number: NA

Molecular weight: Translated: 21093; Mature: 20962

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGPRYKVPLRRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVV
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE
GVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAVL
ECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
RGAVEGGLEVPHSDEVLPDDSRIRGEHIAAYYEMNPERFGEYEKRGLKPSDLPAHVDEIK
HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCHHHHCCCCCCCCCHHHHHHH
EKLMVIS
HHHHCCC
>Mature Secondary Structure 
ARGPRYKVPLRRRREGKTNYRKRLKLLLSRKPRLVVRITNRRVIAQIVEYAPEGDRVVV
CCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE
GVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQKGIGEAVLDIGLHTPTRGSRVFAVL
ECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
RGAVEGGLEVPHSDEVLPDDSRIRGEHIAAYYEMNPERFGEYEKRGLKPSDLPAHVDEIK
HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCHHHHCCCCCCCCCHHHHHHH
EKLMVIS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]