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The map label for this gene is rps4E

Identifier: 11499497

GI number: 11499497

Start: 1719007

End: 1719714

Strand: Reverse

Name: rps4E

Synonym: AF1913

Alternate gene names: 11499497

Gene position: 1719714-1719007 (Counterclockwise)

Preceding gene: 11499498

Following gene: 11499496

Centisome position: 78.94

GC content: 50.28

Gene sequence:

>708_bases
GTGATTGAGTTGCATCAGAAGAGACTTTCCGCTCCGAAAACGTACAAAATTCCGAGAAAGGTTTCAAAGTGGGTTGTAAA
GCCCTCACCTGGCCCACATAACAAGGAAGCCATCCCGCTTCTCGTGCTCGTTAGGGACTTCCTTGAGCTTGCCGATACCG
GTAGAGAGGCGAGGAGAATCATTTCTGCAGGAGAGATACTTGTTGACGGAGTCGTCAGGAAGGACTACAAGTTCCCCGTG
GGGCTTTTTGACGTTGTCACCATTCCAAAGCTTGAGAAGAGCTACAGAATTCTTTTCGACGAGAAGGGAAGGTATATACC
AAAGGAGGTTGAGGATGCGGACCTCAAGCTCTACAAGATAACCAACAAAACGCTTGTGAGAGGGGGCAAGGTTCAGCTCA
ACCTCTTTGACGGCACAAACATCCTCGGCAGCAATGATTACAAGACGAAGGACAGCATCCTGCTAAGGATTCCCGAAAAG
GAGGTCGTTGACCACCTCAAGTTCGAGGAAGGGGCCCTCGTCATGATTACCGGCGGCACTCATGCTGGTGAGATTGGCAG
GATAAAGAGCTACAAGATTGTGAGGAGCTCTGCACCCAACCTCGTTACTGTTGAGGGAGAGGAGAGGGACATCACGACCA
TTGAGGACTACGTGTTTGTTGTGGGCAAAAAGGACAGTGATAAGCCCGTGATTGACCTGGGGGTGTAA

Upstream 100 bases:

>100_bases
AAGCTGACGGGACTGAGGTTGCGGTTCCGATTCATCCGTCAAATGTTATGATCACAGACTTCGGCGAAGTGGACGAGGTC
AGAAAGAAAATCCTTGAGAG

Downstream 100 bases:

>100_bases
GGGATGCAGGCGGTTGAGATGGAAAAGAAGGCAGGAAATGAAAATCCGATGAGGGAAGTGGTGCTGGACAAGGTTGTCAT
CAACATAGGCGTTGGTGAGA

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MIELHQKRLSAPKTYKIPRKVSKWVVKPSPGPHNKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPV
GLFDVVTIPKLEKSYRILFDEKGRYIPKEVEDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSNDYKTKDSILLRIPEK
EVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDLGV

Sequences:

>Translated_235_residues
MIELHQKRLSAPKTYKIPRKVSKWVVKPSPGPHNKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPV
GLFDVVTIPKLEKSYRILFDEKGRYIPKEVEDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSNDYKTKDSILLRIPEK
EVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDLGV
>Mature_235_residues
MIELHQKRLSAPKTYKIPRKVSKWVVKPSPGPHNKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPV
GLFDVVTIPKLEKSYRILFDEKGRYIPKEVEDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSNDYKTKDSILLRIPEK
EVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDLGV

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506725, Length=233, Percent_Identity=31.3304721030043, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI4506727, Length=233, Percent_Identity=30.4721030042918, Blast_Score=108, Evalue=3e-24,
Organism=Homo sapiens, GI88703062, Length=233, Percent_Identity=28.3261802575107, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17543386, Length=225, Percent_Identity=32.8888888888889, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6322605, Length=234, Percent_Identity=32.0512820512821, Blast_Score=113, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6321997, Length=234, Percent_Identity=32.0512820512821, Blast_Score=113, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24663672, Length=237, Percent_Identity=32.4894514767932, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24663668, Length=237, Percent_Identity=32.4894514767932, Blast_Score=113, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_ARCFU (O28366)

Other databases:

- EMBL:   AE000782
- PIR:   H69488
- RefSeq:   NP_070738.1
- ProteinModelPortal:   O28366
- GeneID:   1485136
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF1913
- NMPDR:   fig|224325.1.peg.1899
- TIGR:   AF_1913
- HOGENOM:   HBG392118
- OMA:   QLNLHDG
- ProtClustDB:   PRK04313
- BioCyc:   AFUL224325:AF_1913-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR005824
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR018199
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00739
- SMART:   SM00363

Pfam domain/function: PF00467 KOW; PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 26439; Mature: 26439

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELHQKRLSAPKTYKIPRKVSKWVVKPSPGPHNKEAIPLLVLVRDFLELADTGREARRI
CCCCCHHHCCCCCCEECCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
ISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEVEDADLKLYKI
HHCCHHEEHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEE
TNKTLVRGGKVQLNLFDGTNILGSNDYKTKDSILLRIPEKEVVDHLKFEEGALVMITGGT
CCCEEEECCEEEEEEECCCEEECCCCCCCCCEEEEEECHHHHHHHHCCCCCCEEEEECCC
HAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDLGV
CCCCCCCEEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCEEEECC
>Mature Secondary Structure
MIELHQKRLSAPKTYKIPRKVSKWVVKPSPGPHNKEAIPLLVLVRDFLELADTGREARRI
CCCCCHHHCCCCCCEECCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH
ISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEVEDADLKLYKI
HHCCHHEEHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEE
TNKTLVRGGKVQLNLFDGTNILGSNDYKTKDSILLRIPEKEVVDHLKFEEGALVMITGGT
CCCEEEECCEEEEEEECCCEEECCCCCCCCCEEEEEECHHHHHHHHCCCCCCEEEEECCC
HAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDLGV
CCCCCCCEEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475