Click here to switch to the map view.

The map label for this gene is hsp20-1

Identifier: 11498894

GI number: 11498894

Start: 1156364

End: 1156888

Strand: Reverse

Name: hsp20-1

Synonym: AF1296

Alternate gene names: NA

Gene position: 1156888-1156364 (Counterclockwise)

Preceding gene: 11498895

Following gene: 11498893

Centisome position: 53.11

GC content: 49.71

Gene sequence:

>525_bases
ATGGTTTGGAGGAGAAGGAGAAGGGACTGGGATGAGGAATGGGACATCTTCGATGAGTTCTTCAGATTCGGCATAGACGA
CATATTCGAGAGGATGATGAGGGACATCGAGGAAATCTTCAGAAAGGCTGAGTCGGGAGAGATAAAACCGATAGTCAGGG
GATTCTCAATCAGGATTGGGCCTGACGGGAAGCCTGAAATAAGGGAGTTCGGAACCAAGCCCACGATCAAGGAGACTGGA
ATTGAAGAGAGGAGACCGCTGGTTGACGTCATAGAGACTGACAACGAGATTCAGGTTATTGCCGAGATGCCAGGAGTGAA
CAAGGACGACATTGAGCTCAACGCTACCGAGACAACTCTAGAAATCAGGGCAGAGGGAGAGAACAGGAAGTACTATGAGA
CCGTTGAACTGCCCGCTGAGGTCGATCCGGACTCAGCGAAGGCGAGATACAACAACGGTGTGCTTGAAGTAATCCTGAAG
AAGAAGACGCCTAAGACGAGCGGAAAGAAAATCAAGATCGAGTGA

Upstream 100 bases:

>100_bases
GAAAAAGGTCAGGCCGAGCCTAACCAAGGAGGACGTTGAGAAGTATGAGAAGTTGATTGAAGATTTCCACAGGATGTACG
CTTAAAGGAGGTGAGGTTGT

Downstream 100 bases:

>100_bases
CTTTCCCTATTTTTTATTTATAAACCGGAACACTCAGAACGACAGAAGAGTTTATAACCGCTTTAGCATAGCGTTTTTAT
GCAACTGACAATAAAGTGGC

Product: small heat shock protein (hsp20-1)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MVWRRRRRDWDEEWDIFDEFFRFGIDDIFERMMRDIEEIFRKAESGEIKPIVRGFSIRIGPDGKPEIREFGTKPTIKETG
IEERRPLVDVIETDNEIQVIAEMPGVNKDDIELNATETTLEIRAEGENRKYYETVELPAEVDPDSAKARYNNGVLEVILK
KKTPKTSGKKIKIE

Sequences:

>Translated_174_residues
MVWRRRRRDWDEEWDIFDEFFRFGIDDIFERMMRDIEEIFRKAESGEIKPIVRGFSIRIGPDGKPEIREFGTKPTIKETG
IEERRPLVDVIETDNEIQVIAEMPGVNKDDIELNATETTLEIRAEGENRKYYETVELPAEVDPDSAKARYNNGVLEVILK
KKTPKTSGKKIKIE
>Mature_174_residues
MVWRRRRRDWDEEWDIFDEFFRFGIDDIFERMMRDIEEIFRKAESGEIKPIVRGFSIRIGPDGKPEIREFGTKPTIKETG
IEERRPLVDVIETDNEIQVIAEMPGVNKDDIELNATETTLEIRAEGENRKYYETVELPAEVDPDSAKARYNNGVLEVILK
KKTPKTSGKKIKIE

Specific function: Chaperone that confers thermal protection to other proteins [H]

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 20419; Mature: 20419

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWRRRRRDWDEEWDIFDEFFRFGIDDIFERMMRDIEEIFRKAESGEIKPIVRGFSIRIG
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEC
PDGKPEIREFGTKPTIKETGIEERRPLVDVIETDNEIQVIAEMPGVNKDDIELNATETTL
CCCCHHHHHCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCEEEE
EIRAEGENRKYYETVELPAEVDPDSAKARYNNGVLEVILKKKTPKTSGKKIKIE
EEEECCCCCEEEEEEECCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCEEEEC
>Mature Secondary Structure
MVWRRRRRDWDEEWDIFDEFFRFGIDDIFERMMRDIEEIFRKAESGEIKPIVRGFSIRIG
CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEC
PDGKPEIREFGTKPTIKETGIEERRPLVDVIETDNEIQVIAEMPGVNKDDIELNATETTL
CCCCHHHHHCCCCCCHHHCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCEEEE
EIRAEGENRKYYETVELPAEVDPDSAKARYNNGVLEVILKKKTPKTSGKKIKIE
EEEECCCCCEEEEEEECCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 9689045; 9707123 [H]