| Definition | Archaeoglobus fulgidus DSM 4304, complete genome. |
|---|---|
| Accession | NC_000917 |
| Length | 2,178,400 |
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The map label for this gene is rfbB-1
Identifier: 11497662
GI number: 11497662
Start: 44093
End: 44806
Strand: Reverse
Name: rfbB-1
Synonym: AF0041
Alternate gene names: 11497662
Gene position: 44806-44093 (Counterclockwise)
Preceding gene: 11497663
Following gene: 11497656
Centisome position: 2.06
GC content: 41.6
Gene sequence:
>714_bases ATGATAGAGGCTGAGGGGATATCGAAGAAGTTCAGAATACCAAGCGAGAAAAGGTTTACGTTATTTGAAGAGCTCTCAGC ATTTTTTAAAGGTAAAAGAGATTTCGTAGAGTTCTGGGCACTCAGGGATGTAAGCTTCAGAGTAAAAAAAGGCGAAACAT TCGGAATCTTCGGACCAAATGGCTCGGGCAAATCCACGATCCTCAAGATAATTGCCGGAATTCTTTATCCTGACACTGGT AGTTTAAGTGTTTCTGGAAAGGTCACACCAATTCTTGAGCTCGGTGTGGGCTTCAATCCAGAGTTAACGGCTAAGGAGAA CGTTTACCTTTACGGAGTCATTATGGGTATGAGTAAGGAGGAAATAAGAAGTAAGATTGAAGAAATCTTCAGGTTTGCAG AACTTGAAAAGTTCAAAAACATGAAGCTCAAGAACTACTCATCTGGTATGTATGCAAGGCTAGCATTCGCAACAGCAGTA GCAACTGAGCCTGAAATTCTCCTGATCGACGAAGTTCTAGCCGTCGGTGATATCTATTTCCAAAGAAAGTGTATAGGCAG AATTAGGGAGTTAAAACAGAATGGAACCACGATAGTCCTCGTTTCCCATTCTCCAAATACTTTACTGGAGTTGTGCGATA GAGTCATGTTGATCGAGGCTGGAACTGTAAAAGCTATAGGTGAACCTGGAAAAGTACTTGAGGGCTATCTTTAA
Upstream 100 bases:
>100_bases TGCTGGAAAAATTTATTTACTTTTTATTAATATCTCTTGCACTCACCTTTGCTGGTCAGTTGTTTTTTAGAAGAATGCAG AAGAGATTTGGTGAAGTTCT
Downstream 100 bases:
>100_bases AACCGCAAAAGAGGGCTGTTGAGCATTTAAAGAGAGAACTTCAAGGAATCACTTAACTTCAAAGATTTTCACAGTTCCGA AATTTTTCAGGAGCCTGAAG
Product: polysaccharide ABC transporter, ATP-binding protein (rfbB-1)
Products: ADP; phosphate; putrescine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPNGSGKSTILKIIAGILYPDTG SLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKEEIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAV ATEPEILLIDEVLAVGDIYFQRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL
Sequences:
>Translated_237_residues MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPNGSGKSTILKIIAGILYPDTG SLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKEEIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAV ATEPEILLIDEVLAVGDIYFQRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL >Mature_237_residues MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPNGSGKSTILKIIAGILYPDTG SLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKEEIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAV ATEPEILLIDEVLAVGDIYFQRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL
Specific function: Influences the expression of the surface array protein gene (vapA). May have both regulatory and transport activities [H]
COG id: COG1134
COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component
Gene ontology:
Cell location: Inner Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI30795238, Length=200, Percent_Identity=29, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI27881501, Length=200, Percent_Identity=29, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=28.3653846153846, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI27262624, Length=234, Percent_Identity=29.0598290598291, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI27262626, Length=234, Percent_Identity=29.0598290598291, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI153792144, Length=204, Percent_Identity=29.4117647058824, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI31657092, Length=216, Percent_Identity=28.2407407407407, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI116734710, Length=220, Percent_Identity=26.3636363636364, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI27477115, Length=196, Percent_Identity=30.6122448979592, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI47078218, Length=201, Percent_Identity=28.3582089552239, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI45446740, Length=201, Percent_Identity=28.3582089552239, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI105990541, Length=191, Percent_Identity=29.8429319371728, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI6005701, Length=196, Percent_Identity=29.5918367346939, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI150417984, Length=201, Percent_Identity=26.3681592039801, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI21536376, Length=200, Percent_Identity=25, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI89111135, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI46592964, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI46592971, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI46592915, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI46592956, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI46592978, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI46592898, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87081791, Length=206, Percent_Identity=29.126213592233, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87081709, Length=201, Percent_Identity=28.3582089552239, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786319, Length=193, Percent_Identity=31.0880829015544, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787370, Length=203, Percent_Identity=27.5862068965517, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI87081782, Length=215, Percent_Identity=30.6976744186047, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=28.8461538461538, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1790467, Length=199, Percent_Identity=29.6482412060301, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=29.1666666666667, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=27.8846153846154, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789032, Length=213, Percent_Identity=25.8215962441315, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1788761, Length=217, Percent_Identity=27.1889400921659, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=25.6637168141593, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=224, Percent_Identity=27.2321428571429, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1787758, Length=206, Percent_Identity=27.1844660194175, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=25.8536585365854, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786398, Length=210, Percent_Identity=27.1428571428571, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787029, Length=213, Percent_Identity=29.1079812206573, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789891, Length=225, Percent_Identity=25.3333333333333, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788225, Length=204, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1786563, Length=203, Percent_Identity=27.0935960591133, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789873, Length=220, Percent_Identity=27.7272727272727, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI87082268, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=23.2876712328767, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786703, Length=211, Percent_Identity=29.8578199052133, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788210, Length=200, Percent_Identity=29, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786345, Length=226, Percent_Identity=26.5486725663717, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786253, Length=204, Percent_Identity=27.4509803921569, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1788897, Length=207, Percent_Identity=27.536231884058, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1787500, Length=243, Percent_Identity=23.8683127572016, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787143, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081834, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1790739, Length=211, Percent_Identity=25.5924170616114, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=206, Percent_Identity=25.7281553398058, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48994883, Length=213, Percent_Identity=27.2300469483568, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788540, Length=197, Percent_Identity=27.4111675126904, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787105, Length=199, Percent_Identity=24.1206030150754, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1790190, Length=222, Percent_Identity=28.8288288288288, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789864, Length=227, Percent_Identity=25.9911894273128, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1790525, Length=214, Percent_Identity=24.7663551401869, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787759, Length=228, Percent_Identity=24.1228070175439, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786872, Length=202, Percent_Identity=28.7128712871287, Blast_Score=61, Evalue=5e-11, Organism=Caenorhabditis elegans, GI115533608, Length=205, Percent_Identity=27.8048780487805, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17565586, Length=201, Percent_Identity=26.3681592039801, Blast_Score=80, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17510237, Length=211, Percent_Identity=27.0142180094787, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17539902, Length=254, Percent_Identity=25.9842519685039, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71983516, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983523, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983510, Length=212, Percent_Identity=25.9433962264151, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992290, Length=215, Percent_Identity=27.4418604651163, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17569081, Length=245, Percent_Identity=24.4897959183673, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17533971, Length=214, Percent_Identity=25.7009345794392, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17552010, Length=213, Percent_Identity=25.3521126760563, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17565938, Length=217, Percent_Identity=24.8847926267281, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=208, Percent_Identity=26.4423076923077, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI116007184, Length=194, Percent_Identity=29.8969072164948, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI221500365, Length=194, Percent_Identity=29.8969072164948, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI116007328, Length=210, Percent_Identity=27.6190476190476, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI28574150, Length=210, Percent_Identity=27.6190476190476, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24643674, Length=203, Percent_Identity=27.5862068965517, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI221512771, Length=201, Percent_Identity=27.8606965174129, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24650853, Length=176, Percent_Identity=28.4090909090909, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24650855, Length=176, Percent_Identity=28.4090909090909, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24666092, Length=206, Percent_Identity=25.7281553398058, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI281362751, Length=176, Percent_Identity=28.4090909090909, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI28573571, Length=206, Percent_Identity=26.2135922330097, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI28573573, Length=207, Percent_Identity=26.0869565217391, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI17136592, Length=218, Percent_Identity=24.3119266055046, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24582014, Length=174, Percent_Identity=28.735632183908, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24582012, Length=174, Percent_Identity=28.735632183908, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI85725262, Length=176, Percent_Identity=26.1363636363636, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI28574259, Length=193, Percent_Identity=26.9430051813472, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI62484234, Length=204, Percent_Identity=28.921568627451, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24648279, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI85724864, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI24580555, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI85816269, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24580553, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI161078426, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357907, Length=203, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581191, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581189, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581193, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24581195, Length=206, Percent_Identity=28.6407766990291, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI281363262, Length=216, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24653245, Length=216, Percent_Identity=25.9259259259259, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26467; Mature: 26467
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPN CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCEEEEECCC GSGKSTILKIIAGILYPDTGSLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKE CCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCHH EIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAVATEPEILLIDEVLAVGDIYF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH QRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHEEEEECCCEEECCCCCHHHCCCC >Mature Secondary Structure MIEAEGISKKFRIPSEKRFTLFEELSAFFKGKRDFVEFWALRDVSFRVKKGETFGIFGPN CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEECCCEEEEECCC GSGKSTILKIIAGILYPDTGSLSVSGKVTPILELGVGFNPELTAKENVYLYGVIMGMSKE CCCHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCHH EIRSKIEEIFRFAELEKFKNMKLKNYSSGMYARLAFATAVATEPEILLIDEVLAVGDIYF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHH QRKCIGRIRELKQNGTTIVLVSHSPNTLLELCDRVMLIEAGTVKAIGEPGKVLEGYL HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHEEEEECCCEEECCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; putrescine [Periplasm]; H2O [C]
Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8491726 [H]