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The map label for this gene is rfbA-1

Identifier: 11497663

GI number: 11497663

Start: 44803

End: 45567

Strand: Reverse

Name: rfbA-1

Synonym: AF0042

Alternate gene names: 11497663

Gene position: 45567-44803 (Counterclockwise)

Preceding gene: 11497666

Following gene: 11497662

Centisome position: 2.09

GC content: 39.22

Gene sequence:

>765_bases
ATGGGTATGTCCGGATATTTGAGAAAAAGAGATGTCATAATCACCATGACTCAATTTGAGTTTAAGCAGAGATACCGAGG
CACGGCTCTAGGTTTGATTTGGAGCCTCTTAGCTCCTTTTTTATTGGCACTCGTCTTGTTTCTGGTTTTCAGAAATATGT
TCTCTTGGGTCGAGAATTTCGCCGCATACGTCTTGGTAGGAGTGTTTGTGTTTAGATTTTTCCAGGTGGCGACGTCTGTT
GGAATGCACACAATCGTTGGTAAGTCTCACCTAGTTACAAAAACGAACATCGATAGGGAACTCTTACCTCTCGCGACGAC
TCTTTCTTACGGCATGAGTTCCTTCCTTGAAATACTCGTAATCGTCCCTATAGTGCACGTTTTGGGTGGAAATGTCGGTT
TTACGATCCTTTTCCTCCCAGTTATTCATTTTGTCTACATAATTTTTATATTTGGTCTAAACTTATTTCTCTCCTCTCTG
ATGGTTTACTTCAGGGATTTAAACCAGATCTGGGAGGTCATAACTAATGTGATATTCTTTGCAAGTCCAATAGTCTATCC
GCTCACAATGATCCCCGAAAGCTACAGAGAAATGTACATGCTCAATCCAATTGCTTGCATCATTGAAATCTACCGTGGAA
TTTTGATGGAAAATCAAATTTTGCTGGAAAAATTTATTTACTTTTTATTAATATCTCTTGCACTCACCTTTGCTGGTCAG
TTGTTTTTTAGAAGAATGCAGAAGAGATTTGGTGAAGTTCTATGA

Upstream 100 bases:

>100_bases
TTGCTCCGAAGTAGTCGTGAAAAACGCAAATTTTCACAGCCTGCCTTAGCGAAGCTGATTAAAAATTTTGCTCTAAGTTT
AAAAACATTGAGCTCAGTCT

Downstream 100 bases:

>100_bases
TAGAGGCTGAGGGGATATCGAAGAAGTTCAGAATACCAAGCGAGAAAAGGTTTACGTTATTTGAAGAGCTCTCAGCATTT
TTTAAAGGTAAAAGAGATTT

Product: polysaccharide ABC transporter, permease protein (rfbA-1)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MGMSGYLRKRDVIITMTQFEFKQRYRGTALGLIWSLLAPFLLALVLFLVFRNMFSWVENFAAYVLVGVFVFRFFQVATSV
GMHTIVGKSHLVTKTNIDRELLPLATTLSYGMSSFLEILVIVPIVHVLGGNVGFTILFLPVIHFVYIIFIFGLNLFLSSL
MVYFRDLNQIWEVITNVIFFASPIVYPLTMIPESYREMYMLNPIACIIEIYRGILMENQILLEKFIYFLLISLALTFAGQ
LFFRRMQKRFGEVL

Sequences:

>Translated_254_residues
MGMSGYLRKRDVIITMTQFEFKQRYRGTALGLIWSLLAPFLLALVLFLVFRNMFSWVENFAAYVLVGVFVFRFFQVATSV
GMHTIVGKSHLVTKTNIDRELLPLATTLSYGMSSFLEILVIVPIVHVLGGNVGFTILFLPVIHFVYIIFIFGLNLFLSSL
MVYFRDLNQIWEVITNVIFFASPIVYPLTMIPESYREMYMLNPIACIIEIYRGILMENQILLEKFIYFLLISLALTFAGQ
LFFRRMQKRFGEVL
>Mature_253_residues
GMSGYLRKRDVIITMTQFEFKQRYRGTALGLIWSLLAPFLLALVLFLVFRNMFSWVENFAAYVLVGVFVFRFFQVATSVG
MHTIVGKSHLVTKTNIDRELLPLATTLSYGMSSFLEILVIVPIVHVLGGNVGFTILFLPVIHFVYIIFIFGLNLFLSSLM
VYFRDLNQIWEVITNVIFFASPIVYPLTMIPESYREMYMLNPIACIIEIYRGILMENQILLEKFIYFLLISLALTFAGQL
FFRRMQKRFGEVL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29430; Mature: 29299

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMSGYLRKRDVIITMTQFEFKQRYRGTALGLIWSLLAPFLLALVLFLVFRNMFSWVENF
CCCCCCCHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAYVLVGVFVFRFFQVATSVGMHTIVGKSHLVTKTNIDRELLPLATTLSYGMSSFLEILV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IVPIVHVLGGNVGFTILFLPVIHFVYIIFIFGLNLFLSSLMVYFRDLNQIWEVITNVIFF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASPIVYPLTMIPESYREMYMLNPIACIIEIYRGILMENQILLEKFIYFLLISLALTFAGQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFFRRMQKRFGEVL
HHHHHHHHHHCCCC
>Mature Secondary Structure 
GMSGYLRKRDVIITMTQFEFKQRYRGTALGLIWSLLAPFLLALVLFLVFRNMFSWVENF
CCCCCCHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAYVLVGVFVFRFFQVATSVGMHTIVGKSHLVTKTNIDRELLPLATTLSYGMSSFLEILV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IVPIVHVLGGNVGFTILFLPVIHFVYIIFIFGLNLFLSSLMVYFRDLNQIWEVITNVIFF
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASPIVYPLTMIPESYREMYMLNPIACIIEIYRGILMENQILLEKFIYFLLISLALTFAGQ
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFFRRMQKRFGEVL
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]