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The map label for this gene is secF

Identifier: 15646156

GI number: 15646156

Start: 1628275

End: 1629246

Strand: Reverse

Name: secF

Synonym: HP1549

Alternate gene names: 15646156

Gene position: 1629246-1628275 (Counterclockwise)

Preceding gene: 161353436

Following gene: 15646155

Centisome position: 97.68

GC content: 40.74

Gene sequence:

>972_bases
ATGGAATTATTCAAACGAACTAGAATCTTAAGCTTCATGCGTTATTCCAATTATGGGGTGATCGTTTCAGCAATTTTAGC
GCTTCTAGCGTTGGGGCTTTTGTTTTTCAAAGGGTTTTCTTTAGGGATTGATTTTGCGGGGGGGAGTTTGGTGCAAGTGC
GCTACACTCAAAACGCCCCCATTAAAGAAGTGCGCGATCTGTTTGAAAAAGAAGCTCGCTTCAAAGGCGTGCAAGTGAGC
GAATTTGGCTCTAAAGAAGAAATTTTAATCAAATTCCCTTTTGTAGAAACGGCTGAAAATGAAGATCTGAACGCTATCGT
GGCCAACATTCTAAAACCCAGCGGCGATTTTGAAATCCGTAAATTTGACACCGTGGGCCCTAGAGTGGGGAGCGAATTGA
AAGAGAAAGGCATTTTGTCGCTGATTTTAGCATTAATAGCGATCATGGTTTATGTGAGTTTCCGCTATGAATGGCGTTTT
GCTTTAGCGAGCGTCATTGCGCTTGTGCATGATGTGATTTTAGTGGCAAGCTCGGTGATTGTTTTTAAGATTGATATGAA
TTTGGAAGTGATTGCGGCCTTGCTCACCTTGATTGGGTATTCCATTAATGATACGATCATTATTTTTGACAGGATCAGAG
AAGAGATGCTCTCTCAAAAAACCAAAAACGCCACTCAAGCCATTGATGAAGCCATTTCTAGCACGCTCACGCGCACGCTT
TTAACTTCTTTAACCGTGTTTTTTGTGGTGTTGATTTTGTGCGTGTTTGGGAGTAAGATCATCATTGGCTTTTCATTGCC
CATGTTAATAGGCACGATTGTAGGGACTTATAGCTCTATTTTCATCGCCCCTAAAGTGGCGTTATTGTTAGGCTTTGATA
TGGATAAATATTATGAGAATGAGACTAGAAAAATTAAAAAAGCTCAAGAGAAAGAAAAAATGCGCCGTTTGTATGAGAGC
GGTCAAGTTTAA

Upstream 100 bases:

>100_bases
TTGGCACGCAAGGGATTTATCAAGCCCTTTTACCTAAACTCACTCAAACAAAAAGCCTTTACTTTTGGTTTGGCGTGAAT
AAAAGAGCTTAGGAGGTTTT

Downstream 100 bases:

>100_bases
GGAGTTTCTATGGATTGGGGTCGGGTCGTTCATGTGCTGTTCAGCCTTATTTCTTTAACCACCATTGCAGGGTTTTTGTA
TGAGCCTAATACGGTGGTGT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MELFKRTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAPIKEVRDLFEKEARFKGVQVS
EFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVIALVHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKTKNATQAIDEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMDKYYENETRKIKKAQEKEKMRRLYES
GQV

Sequences:

>Translated_323_residues
MELFKRTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAPIKEVRDLFEKEARFKGVQVS
EFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVIALVHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKTKNATQAIDEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMDKYYENETRKIKKAQEKEKMRRLYES
GQV
>Mature_323_residues
MELFKRTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAPIKEVRDLFEKEARFKGVQVS
EFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRF
ALASVIALVHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKTKNATQAIDEAISSTLTRTL
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMDKYYENETRKIKKAQEKEKMRRLYES
GQV

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=306, Percent_Identity=34.9673202614379, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 36277; Mature: 36277

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFKRTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHCEEEECCCCEEEEEECCCCC
IKEVRDLFEKEARFKGVQVSEFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIR
HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCCCCEEE
KFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASSVI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
VFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKTKNATQAIDEAISSTLTRTL
EEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMDKYYEN
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ETRKIKKAQEKEKMRRLYESGQV
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELFKRTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHCEEEECCCCEEEEEECCCCC
IKEVRDLFEKEARFKGVQVSEFGSKEEILIKFPFVETAENEDLNAIVANILKPSGDFEIR
HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCCCCEEE
KFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASSVI
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
VFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEMLSQKTKNATQAIDEAISSTLTRTL
EEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLGFDMDKYYEN
HHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
ETRKIKKAQEKEKMRRLYESGQV
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]