| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15646114
GI number: 15646114
Start: 1577937
End: 1578971
Strand: Reverse
Name: Not Available
Synonym: HP1505
Alternate gene names: 15646114
Gene position: 1578971-1577937 (Counterclockwise)
Preceding gene: 15646115
Following gene: 15646113
Centisome position: 94.67
GC content: 40.19
Gene sequence:
>1035_bases ATGAGACTTTATGAGAGTTTATTAGAAATGTGCTTGAATAAGGCATGGGAGCATCAAACCCTAGCCTTAGAAAACCCAAG CGTAGCTTGCATGGTGTTGGATAAAAACCATGAGATCTTGAGTTTAGAAACCCACAAAAAAGCCAAAACCCCGCATGCAG AAGTCTTAGCCGCCCAATCAGCGCTAAAGATTTTACGCCCCAGTTTGAAAAACGATTTAGAAAAGTTAGAAGACCCTAAA ACTTTAAGCGATTTTTTAAAAACGCACCACGATAACGCTTTTACAGACTGCGTTTTTTTAATCACCTTAGAGCCATGCAA TTCTTATGGCAAAACCCCGGCTTGTAGCGAATTGTTAGAAATTTTAAAGCCTAAAAGAGTGGTCATTGCCACAGAAGAAA ACGAAGCTAAAAAAGGGGGTTTAGCAAGGCTACAAAAGGCTCGTATTGAAACAATAATTTGCCACAATTTAGAAAACAAA GCTAAAGACTTGCTCTTGCCTTTTAGGGTAATGGAACAAAAGGGGCGTTTTAATTTGTTCAAACTCGCTTTAAGAATGAA TGGGGATTACCATCATGGCAAGATCACCGGGCAAAAAAGCGTTATTTTCACGCACAACCAGCGAGCAATATGCGACACGC TTATTGTTTCTGGGAAAACCATAAGAACGGACAACCCCTTATTGGACGCTCGCTTTTGCGACAGCTTTTATCAAAATAAA AACCCCAATATCGCTATTTTATCCAAGCGCTCAATTGACCCTAATTCAAAAGTTTTTTCTGCGCCTAATCGTTTAGTTAA CACTTTCCATGACCCCAAAGATTTACCCCTAGAGAAGGGGTTTAATTTCATTGAAGGGGGGTGGGAATTGTTTGAGAGCT TGAGGGATAAAATAGACGCGTTGCTTTTGCATTCGCATGCGTCTATGATTGGCGAAGCGTTTAAGGCACTCGCTCTAAAA ACCCCTTTTAAAGGACGGTTGTTGCATGCGCAAATCTTAGAAAATGAAGCCCTTTTATGGATAGAAAACTCTTAA
Upstream 100 bases:
>100_bases ATGTGGCGTTTATCGTCGTGCCTTTAGTGGGAGCGTTTTTTGTTGATATTATTAACGCTTTAGCGATTAAAGGCTTTTTG CTCTTGCCTTTTTTCCCATC
Downstream 100 bases:
>100_bases GATTATACCAGCCTTTGAACGCTTATTCTTACAACAGCGATTCGCTTTTTTTATACGATTTTTCACGCCCTTTTATCAAA AACAGCGGCGCGATTTTAGA
Product: riboflavin biosynthesis protein (ribG)
Products: NA
Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEKLEDPK TLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGGLARLQKARIETIICHNLENK AKDLLLPFRVMEQKGRFNLFKLALRMNGDYHHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNK NPNIAILSKRSIDPNSKVFSAPNRLVNTFHDPKDLPLEKGFNFIEGGWELFESLRDKIDALLLHSHASMIGEAFKALALK TPFKGRLLHAQILENEALLWIENS
Sequences:
>Translated_344_residues MRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEKLEDPK TLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGGLARLQKARIETIICHNLENK AKDLLLPFRVMEQKGRFNLFKLALRMNGDYHHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNK NPNIAILSKRSIDPNSKVFSAPNRLVNTFHDPKDLPLEKGFNFIEGGWELFESLRDKIDALLLHSHASMIGEAFKALALK TPFKGRLLHAQILENEALLWIENS >Mature_344_residues MRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEKLEDPK TLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGGLARLQKARIETIICHNLENK AKDLLLPFRVMEQKGRFNLFKLALRMNGDYHHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNK NPNIAILSKRSIDPNSKVFSAPNRLVNTFHDPKDLPLEKGFNFIEGGWELFESLRDKIDALLLHSHASMIGEAFKALALK TPFKGRLLHAQILENEALLWIENS
Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]
COG id: COG1985
COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the HTP reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016192 - InterPro: IPR002125 - InterPro: IPR016193 - InterPro: IPR004794 - InterPro: IPR011549 - InterPro: IPR002734 [H]
Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]
EC number: =3.5.4.26; =1.1.1.193 [H]
Molecular weight: Translated: 39026; Mature: 39026
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQS CCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHH ALKILRPSLKNDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLE HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHH ILKPKRVVIATEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLF HHCCCEEEEEECCCCCHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEE KLALRMNGDYHHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNK EEEEEECCCCCCCEECCCCEEEEECCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCC NPNIAILSKRSIDPNSKVFSAPNRLVNTFHDPKDLPLEKGFNFIEGGWELFESLRDKIDA CCCEEEEEECCCCCCCCEECCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH LLLHSHASMIGEAFKALALKTPFKGRLLHAQILENEALLWIENS HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEECCCCEEEEEECC >Mature Secondary Structure MRLYESLLEMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQS CCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHH ALKILRPSLKNDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLE HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHH ILKPKRVVIATEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLF HHCCCEEEEEECCCCCHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEE KLALRMNGDYHHGKITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNK EEEEEECCCCCCCEECCCCEEEEECCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCC NPNIAILSKRSIDPNSKVFSAPNRLVNTFHDPKDLPLEKGFNFIEGGWELFESLRDKIDA CCCEEEEEECCCCCCCCEECCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH LLLHSHASMIGEAFKALALKTPFKGRLLHAQILENEALLWIENS HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEECCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]