| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15646112
GI number: 15646112
Start: 1574847
End: 1577213
Strand: Reverse
Name: Not Available
Synonym: HP1503
Alternate gene names: 15646112
Gene position: 1577213-1574847 (Counterclockwise)
Preceding gene: 15646113
Following gene: 15646110
Centisome position: 94.56
GC content: 40.35
Gene sequence:
>2367_bases ATGAAATGTTCGCATTGCCAGTTGGAGTTTAAAGAAAGTGAGCTTTTTAAAGAGGTGATCAATCATAAAGAATTGCATTT TTGCTGCACGGGGTGCGCTAGGGTGTATGCGTTATTGTTAGATTTGAATTTAGAGAGCTTTTATGACAAATTAAACGATT CCACTTTAGCCCCCGTAACGCCCCAAGATTCAATGAGCGCTTTGGAATTAGAACAAGCCCTTGAAGAAAACAATAAGGGC GATTTTATCCTTAATCTTTTGTTAGAAAAAACGCATTGTAACGCTTGCTTGTGGCTCAATCAAAAGGTTTTAGAACGTTT AAGTGGGGTTAAAAAAGTGAGCGTGAATTTCACCACCCACCACTTGCAAATCGTGTTTGAGAAGTCCTTAAACCCTAAAG AGATTATTCAAAAAATTGAGAGTTTGGGCTATGGGGCTAAAATTTATAATGCGCAAAATTACACCCTAAAAGCGCAAAAA GAACAGCGCTCCTACTTGCTCACTTTGAGCGTGGGGTTTTTTGCCACTATGAATTTGATGTTTATCGCCATTGCCAAATA CGCAAGTTATGGTGGCGCAAGTTATGGCGGTGCGAATTATGGCGCTGGCATGGATAAGCTTATGCAAAGGAATTTGGATC TCGTATCGCTCTTTTTAAGCTTGTTGGTGTTAGTGGTTGTGGGGCGTTTTTTCATTAAGGGGGCGTTTTATGGGCTAAAA AATGGCGTTTTGGGCATGGATTTGAGCGTGTCTTTTGGAGCGTTATCGGCGTTTGTTTATTCCGTTTATGCCATGTTGGT GTCCCAAGAGACTTATTTTGAAGCGAGCAGCACGATTCTAACGCTTGTTTTTGGCTCTAAGTTTTTGGAATTAAAAGCCA GGCTGTTTGCGAATGAAAAATGTCTGGCCCTAGAATCGCATGAAATCCATAGCGTGATCGTTGTAGAAAATGGCAAGCAA ACAGAAAAACACCCTAAAGATGTGGCGATAGGCTCTGTTGTTTGGGTGCCAAGCGGGGCTAAAATCGCACTAGATGGCGT GCTTTTAAATAATGCGAGCGTGGATGCGTCTTTGATCAGTGGGGAGTTTAAGCCTTTGGAATTGGGGGTTAATGATCCAA TTTTAGGGGGTTATGTGAATGTGGGCGTGCCTTTTAGCTATCAAGTGAGCGCTAATTTTCAAAACTCACGCCTTTCTGGT TTGTTAGAAACTTTAAAAAAGAGTTTTTTAGAAAAGCCCTTAATTGAGAGTAGCGCGAATCAAATTGCGGATATTTTTTC TAAAGCGGTGTTGTTTTTAGCCTTTGTAAGCTTTTTGTTATGGCAATTTGGTTTGGGGGGTAATTTTGAAAAAGCCTTAA TGGTGTGTATTAGCGTGCTAGTCATCAGCTGCCCTTGCGCGTTCGCTCTGGCTACGCCCATTGCGTTAGTGATAGGGGTG TTTAAAAACCCTTTGATCGTGTTTAAAGAAGCGTTGTTTTTAGAAACTCTGGCTAAAGTGAAAAAAATCTTTATAGACAA AACCGGCACGCTCACGCAAAAAGAAGTCCTTTTAAAAGAAAAAATCATTTATGAAGAATTTGATGGAAGGCTTTTGAAGA GCCTTTTAAAAGTGAGAGAGCATTTAGCCCATAGCGCGATTCTTAAATCTCTAGATGGCGATGAGGTTAGTTTAGAAAAG ATAGAGTTTTTCGCTCATGGTCTGAAAGCGAGCTATCAAAACGAAACCCTGCTAGTGGGGAGTTTGAAATTTTTGGGATC TATGGGGGTGGATATACCAATGAAAGAGAGCGCTAATATCATGGTAGGCTTTGCGAAAAATGAGACTTTATGCGCGTTAT TCATTTTAGAAGAGCGTTTGAAAGCTAACGCTAAAGAAGTCGTTCAGGCTTTACAAAATAAAGGCTTAGAATTAGAGATT TTAAGCGGGGATAATGAAAGCTCGGTTAAGGAGTGCGCGAAAAAATTAGGGATTTCTAATTATCATGCCCATTTGACCCC TGAAGATAAGGCTCAAACCATCAGCTCTTATAAGGGCGTTTGCGCGATGGTAGGCGATGGCAATAATGATGCGTTAGCCT TAAAACAAGCGAGCGTTTCTTTAGGGTTTGAAAAAAGCGCTTTGAGTAAAAGCGCATGCGATATTTTGCTTTTAGAAGAG GATTTGAGTTTGCTAAAAAAAGCGTTTGATAACGCTCAAAAAGTCTATCAAGTGGTGTTGCAAAACATTGTTTTGAGCTT GATTTATAACGCTATTTTAATCCCGGTCGCTATGCTAGGATACATTAACCCTTTAATAGCGAGTTTGAGCATGAGCGCTA GCTCACTCTTAGTGGTCTTAAATTCTTTGAGGTTGAAACGCTCTTAA
Upstream 100 bases:
>100_bases AGCGACAACACCAAAGAAGTTTTAAGCATCTATCAAACTTGTAACACTTATTCTATCAAAGCGCTTCTAAACTAGCGCCC TTAAATTAAGGATTAAAAAA
Downstream 100 bases:
>100_bases ACAAACCACATCGTTTTGGCTAAAATGGCGATTAAAAAGCCAAAAGTTAGAGCGATAGGGTGGATATATTTACCAATAGG GTTTTTCTTGCCCAAAAACT
Product: cation-transporting ATPase, P-type (copA)
Products: ADP; Orthophosphate. [C]
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MKCSHCQLEFKESELFKEVINHKELHFCCTGCARVYALLLDLNLESFYDKLNDSTLAPVTPQDSMSALELEQALEENNKG DFILNLLLEKTHCNACLWLNQKVLERLSGVKKVSVNFTTHHLQIVFEKSLNPKEIIQKIESLGYGAKIYNAQNYTLKAQK EQRSYLLTLSVGFFATMNLMFIAIAKYASYGGASYGGANYGAGMDKLMQRNLDLVSLFLSLLVLVVVGRFFIKGAFYGLK NGVLGMDLSVSFGALSAFVYSVYAMLVSQETYFEASSTILTLVFGSKFLELKARLFANEKCLALESHEIHSVIVVENGKQ TEKHPKDVAIGSVVWVPSGAKIALDGVLLNNASVDASLISGEFKPLELGVNDPILGGYVNVGVPFSYQVSANFQNSRLSG LLETLKKSFLEKPLIESSANQIADIFSKAVLFLAFVSFLLWQFGLGGNFEKALMVCISVLVISCPCAFALATPIALVIGV FKNPLIVFKEALFLETLAKVKKIFIDKTGTLTQKEVLLKEKIIYEEFDGRLLKSLLKVREHLAHSAILKSLDGDEVSLEK IEFFAHGLKASYQNETLLVGSLKFLGSMGVDIPMKESANIMVGFAKNETLCALFILEERLKANAKEVVQALQNKGLELEI LSGDNESSVKECAKKLGISNYHAHLTPEDKAQTISSYKGVCAMVGDGNNDALALKQASVSLGFEKSALSKSACDILLLEE DLSLLKKAFDNAQKVYQVVLQNIVLSLIYNAILIPVAMLGYINPLIASLSMSASSLLVVLNSLRLKRS
Sequences:
>Translated_788_residues MKCSHCQLEFKESELFKEVINHKELHFCCTGCARVYALLLDLNLESFYDKLNDSTLAPVTPQDSMSALELEQALEENNKG DFILNLLLEKTHCNACLWLNQKVLERLSGVKKVSVNFTTHHLQIVFEKSLNPKEIIQKIESLGYGAKIYNAQNYTLKAQK EQRSYLLTLSVGFFATMNLMFIAIAKYASYGGASYGGANYGAGMDKLMQRNLDLVSLFLSLLVLVVVGRFFIKGAFYGLK NGVLGMDLSVSFGALSAFVYSVYAMLVSQETYFEASSTILTLVFGSKFLELKARLFANEKCLALESHEIHSVIVVENGKQ TEKHPKDVAIGSVVWVPSGAKIALDGVLLNNASVDASLISGEFKPLELGVNDPILGGYVNVGVPFSYQVSANFQNSRLSG LLETLKKSFLEKPLIESSANQIADIFSKAVLFLAFVSFLLWQFGLGGNFEKALMVCISVLVISCPCAFALATPIALVIGV FKNPLIVFKEALFLETLAKVKKIFIDKTGTLTQKEVLLKEKIIYEEFDGRLLKSLLKVREHLAHSAILKSLDGDEVSLEK IEFFAHGLKASYQNETLLVGSLKFLGSMGVDIPMKESANIMVGFAKNETLCALFILEERLKANAKEVVQALQNKGLELEI LSGDNESSVKECAKKLGISNYHAHLTPEDKAQTISSYKGVCAMVGDGNNDALALKQASVSLGFEKSALSKSACDILLLEE DLSLLKKAFDNAQKVYQVVLQNIVLSLIYNAILIPVAMLGYINPLIASLSMSASSLLVVLNSLRLKRS >Mature_788_residues MKCSHCQLEFKESELFKEVINHKELHFCCTGCARVYALLLDLNLESFYDKLNDSTLAPVTPQDSMSALELEQALEENNKG DFILNLLLEKTHCNACLWLNQKVLERLSGVKKVSVNFTTHHLQIVFEKSLNPKEIIQKIESLGYGAKIYNAQNYTLKAQK EQRSYLLTLSVGFFATMNLMFIAIAKYASYGGASYGGANYGAGMDKLMQRNLDLVSLFLSLLVLVVVGRFFIKGAFYGLK NGVLGMDLSVSFGALSAFVYSVYAMLVSQETYFEASSTILTLVFGSKFLELKARLFANEKCLALESHEIHSVIVVENGKQ TEKHPKDVAIGSVVWVPSGAKIALDGVLLNNASVDASLISGEFKPLELGVNDPILGGYVNVGVPFSYQVSANFQNSRLSG LLETLKKSFLEKPLIESSANQIADIFSKAVLFLAFVSFLLWQFGLGGNFEKALMVCISVLVISCPCAFALATPIALVIGV FKNPLIVFKEALFLETLAKVKKIFIDKTGTLTQKEVLLKEKIIYEEFDGRLLKSLLKVREHLAHSAILKSLDGDEVSLEK IEFFAHGLKASYQNETLLVGSLKFLGSMGVDIPMKESANIMVGFAKNETLCALFILEERLKANAKEVVQALQNKGLELEI LSGDNESSVKECAKKLGISNYHAHLTPEDKAQTISSYKGVCAMVGDGNNDALALKQASVSLGFEKSALSKSACDILLLEE DLSLLKKAFDNAQKVYQVVLQNIVLSLIYNAILIPVAMLGYINPLIASLSMSASSLLVVLNSLRLKRS
Specific function: Involved in copper export [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 HMA domains [H]
Homologues:
Organism=Homo sapiens, GI55743071, Length=818, Percent_Identity=23.2273838630807, Blast_Score=167, Evalue=3e-41, Organism=Homo sapiens, GI115529486, Length=538, Percent_Identity=23.4200743494424, Blast_Score=121, Evalue=3e-27, Organism=Homo sapiens, GI55743073, Length=497, Percent_Identity=24.5472837022133, Blast_Score=115, Evalue=2e-25, Organism=Escherichia coli, GI1786691, Length=843, Percent_Identity=25.5041518386714, Blast_Score=216, Evalue=5e-57, Organism=Escherichia coli, GI1789879, Length=714, Percent_Identity=22.96918767507, Blast_Score=142, Evalue=6e-35, Organism=Caenorhabditis elegans, GI17556548, Length=441, Percent_Identity=25.3968253968254, Blast_Score=104, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6319772, Length=631, Percent_Identity=28.2091917591125, Blast_Score=199, Evalue=2e-51, Organism=Saccharomyces cerevisiae, GI6320475, Length=765, Percent_Identity=24.8366013071895, Blast_Score=178, Evalue=3e-45, Organism=Drosophila melanogaster, GI221329854, Length=487, Percent_Identity=25.2566735112936, Blast_Score=111, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR006403 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR017969 - InterPro: IPR006121 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00403 HMA; PF00702 Hydrolase [H]
EC number: 3.6.3.4 [C]
Molecular weight: Translated: 86536; Mature: 86536
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: PS00154 ATPASE_E1_E2 ; PS50846 HMA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKCSHCQLEFKESELFKEVINHKELHFCCTGCARVYALLLDLNLESFYDKLNDSTLAPVT CCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC PQDSMSALELEQALEENNKGDFILNLLLEKTHCNACLWLNQKVLERLSGVKKVSVNFTTH CCCHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCEEEECCHHHHHHHCCCEEEEEEEEEE HLQIVFEKSLNPKEIIQKIESLGYGAKIYNAQNYTLKAQKEQRSYLLTLSVGFFATMNLM EEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCEEEEEEHHHHHHHHHH FIAIAKYASYGGASYGGANYGAGMDKLMQRNLDLVSLFLSLLVLVVVGRFFIKGAFYGLK HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NGVLGMDLSVSFGALSAFVYSVYAMLVSQETYFEASSTILTLVFGSKFLELKARLFANEK CCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHEEEEHHHHHHHHHHHHHHCCCC CLALESHEIHSVIVVENGKQTEKHPKDVAIGSVVWVPSGAKIALDGVLLNNASVDASLIS EEEEECCCCEEEEEEECCCCCCCCCCCEEECEEEEECCCCEEEEEEEEECCCCCCHHHHC GEFKPLELGVNDPILGGYVNVGVPFSYQVSANFQNSRLSGLLETLKKSFLEKPLIESSAN CCCCEEEECCCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH QIADIFSKAVLFLAFVSFLLWQFGLGGNFEKALMVCISVLVISCPCAFALATPIALVIGV HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH FKNPLIVFKEALFLETLAKVKKIFIDKTGTLTQKEVLLKEKIIYEEFDGRLLKSLLKVRE HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH HLAHSAILKSLDGDEVSLEKIEFFAHGLKASYQNETLLVGSLKFLGSMGVDIPMKESANI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCCCCCCCCCCCE MVGFAKNETLCALFILEERLKANAKEVVQALQNKGLELEILSGDNESSVKECAKKLGISN EEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCC YHAHLTPEDKAQTISSYKGVCAMVGDGNNDALALKQASVSLGFEKSALSKSACDILLLEE CEEECCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHCCCCHHHCCCCCCCEEEEHH DLSLLKKAFDNAQKVYQVVLQNIVLSLIYNAILIPVAMLGYINPLIASLSMSASSLLVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH NSLRLKRS HHHHHCCC >Mature Secondary Structure MKCSHCQLEFKESELFKEVINHKELHFCCTGCARVYALLLDLNLESFYDKLNDSTLAPVT CCCCCCEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC PQDSMSALELEQALEENNKGDFILNLLLEKTHCNACLWLNQKVLERLSGVKKVSVNFTTH CCCHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCEEEECCHHHHHHHCCCEEEEEEEEEE HLQIVFEKSLNPKEIIQKIESLGYGAKIYNAQNYTLKAQKEQRSYLLTLSVGFFATMNLM EEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCEEEEEEHHHHHHHHHH FIAIAKYASYGGASYGGANYGAGMDKLMQRNLDLVSLFLSLLVLVVVGRFFIKGAFYGLK HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NGVLGMDLSVSFGALSAFVYSVYAMLVSQETYFEASSTILTLVFGSKFLELKARLFANEK CCCEEEECCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHEEEEHHHHHHHHHHHHHHCCCC CLALESHEIHSVIVVENGKQTEKHPKDVAIGSVVWVPSGAKIALDGVLLNNASVDASLIS EEEEECCCCEEEEEEECCCCCCCCCCCEEECEEEEECCCCEEEEEEEEECCCCCCHHHHC GEFKPLELGVNDPILGGYVNVGVPFSYQVSANFQNSRLSGLLETLKKSFLEKPLIESSAN CCCCEEEECCCCCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHH QIADIFSKAVLFLAFVSFLLWQFGLGGNFEKALMVCISVLVISCPCAFALATPIALVIGV HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH FKNPLIVFKEALFLETLAKVKKIFIDKTGTLTQKEVLLKEKIIYEEFDGRLLKSLLKVRE HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH HLAHSAILKSLDGDEVSLEKIEFFAHGLKASYQNETLLVGSLKFLGSMGVDIPMKESANI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCCCCCCCCCCCE MVGFAKNETLCALFILEERLKANAKEVVQALQNKGLELEILSGDNESSVKECAKKLGISN EEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCC YHAHLTPEDKAQTISSYKGVCAMVGDGNNDALALKQASVSLGFEKSALSKSACDILLLEE CEEECCCCHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHCCCCHHHCCCCCCCEEEEHH DLSLLKKAFDNAQKVYQVVLQNIVLSLIYNAILIPVAMLGYINPLIASLSMSASSLLVVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH NSLRLKRS HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; H2O [C]
Specific reaction: ATP + H2O = ADP + Orthophosphate. [C]
General reaction: Phosphorous acid anhydride hydrolysis [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA