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The map label for this gene is secY

Identifier: 15645913

GI number: 15645913

Start: 1371359

End: 1372621

Strand: Reverse

Name: secY

Synonym: HP1300

Alternate gene names: 15645913

Gene position: 1372621-1371359 (Counterclockwise)

Preceding gene: 161353439

Following gene: 15645912

Centisome position: 82.3

GC content: 41.73

Gene sequence:

>1263_bases
ATGAATAAAGCTATTGCTAGTAAGATACTCATCACTTTGGGTTTTTTATTTCTCTACAGAGTCTTAGCTTATATCCCCAT
TCCTGGCGTAGATTTAGCAGCGATCAAGGCTTTTTTTGACAGCAATTCCAACAACGCTTTGGGGTTGTTTAATATGTTTA
GCGGGAATGCGGTTTCTCGCTTGAGCATCATCTCGTTGGGTATCATGCCCTATATCACTTCTTCAATTATCATGGAGCTT
TTGAGCGCGACTTTCCCTAACCTGGCTAAAATGAAAAAAGAGCGGGATGGCATGCAAAAATACATGCAAATCGTGCGTTA
TTTGACCATTTTAATCACCCTAATCCAAGCGGTGAGCGTTTCAGTAGGCTTAAGGAGCATTAGTGGAGGAGCCAATGGGG
CGATCATGATTGATATGCAAGTTTTTATGATCGTTTCAGCGTTTTCTATGCTTACAGGAACGATGCTACTCATGTGGATA
GGGGAGCAAATCACGCAAAGGGGCGTGGGGAATGGGATCAGTCTCATTATTTTTGCCGGGATTGTTTCAGGGATCCCATC
AGCTATTTCAGGCACATTCAATTTGGTCAATACGGGCGTTATTAATATCTTAATGCTCATTGGTATTGTGCTGATTGTTT
TAGCGACTATTTTTGCGATTATCTATGTGGAATTAGCTGAGCGCAGGATCCCTATTTCTTATGCGCGTAAAGTGGTGATG
CAAAACCAAAACAAGCGCATCATGAATTACATTCCTATTAAGTTGAATTTAAGTGGGGTGATCCCCCCTATTTTCGCTTC
AGCTTTGCTCGTGTTCCCTTCTACGATTTTGCAGCAAGCCACAAGCAACAAAACCTTGCAAGCGGTTGCGGATTTTTTAA
GCCCGCAAGGGTATGCGTATAATATTTTGATGTTCTTGCTCATCATCTTTTTTGCTTACTTTTATTCTTCTATTGTGTTC
AATTCTAAGGATATTGCGGATAATTTGAGGCGTAATGGCGGGTATATTCCAGGGCTTAGGCCTGGAGAGGGGACTTCATC
GTTTTTAAATTCTGTAGCGAGTAAGCTCACTTTGTGGGGTTCATTGTATTTAGCGCTCATTTCTACCGTGCCTTGGATTT
TGGTTAAGGCTATGGGCGTGCCTTTTTACTTTGGAGGCACAGCGGTGCTGATTGTGGTTCAAGTCGCTATTGACACCATG
AAAAAGATTGAAGCGCAAATTTATATGAGCAAGTATAAAACTTTAAGCGCGGTAGGCTTTTAA

Upstream 100 bases:

>100_bases
TAAAAACTTGGCTTCTAAGATTAAAGATGAGAGAATCAAAACAAGCGGGCAGAAGTAATGCCCCTGTTGTATCAGCTTGA
TTTAAGAGGAATAAGTTATT

Downstream 100 bases:

>100_bases
TGGCAATCTCTATTAAAAGCCCAAAAGAAATCAAAGCTCTAAGAAAAGCCGGGGAATTAACCGCTCAAGCGTTAGCCCTT
TTAGAGCGAGAAGTAAGGCC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQIYMSKYKTLSAVGF

Sequences:

>Translated_420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQIYMSKYKTLSAVGF
>Mature_420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQIYMSKYKTLSAVGF

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=418, Percent_Identity=40.4306220095694, Blast_Score=298, Evalue=3e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 45830; Mature: 45830

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
LSIISLGIMPYITSSIIMELLSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWIGEQITQRGVGNGISLIIFAG
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAY
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
NILMFLLIIFFAYFYSSIVFNSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTMKKIEAQIYMSKYKTLSAVGF
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
LSIISLGIMPYITSSIIMELLSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWIGEQITQRGVGNGISLIIFAG
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAY
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
NILMFLLIIFFAYFYSSIVFNSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTMKKIEAQIYMSKYKTLSAVGF
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]