| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645896
GI number: 15645896
Start: 1358992
End: 1360449
Strand: Reverse
Name: Not Available
Synonym: HP1283
Alternate gene names: NA
Gene position: 1360449-1358992 (Counterclockwise)
Preceding gene: 15645897
Following gene: 15645895
Centisome position: 81.57
GC content: 35.8
Gene sequence:
>1458_bases TTGAAATCTTTACTCTCTTTGTTTTTAAAATCAAAATTATCTTATCTTTATTATTGCCCTTATATAGCTTTCGTTTTGAT GGTTGCAACCATTGCAAAAATTCCTCTTATTCAAAAGATTCCTGTTATTAGAAGGTTCTTTAATAGTCGTTACTCCTTTC AAAAAGACAGCCTTATTCGCATCCAAAACCAACTAGACAGATTGCTCACCCTTACAAAGCCTGCTCCTCCACCCATTCGT AAAAAAACCTTATGTTTTATCCGCTTGGACATCATTGGAGATTATATACTCTATCGCAATTTTTTACCTCTTTTTAAAAA ATATTTTGAAGATTATGAAACCACCTTTATTGGAAACGCTACTATCAAGGGTATAGCAACCCATTGCGATTCCCAATATA TAGATAAGTTTATCTTTTTAGACAACGCTTATTGGGAAAAATACTTGCGGATTGGCGTTAATGGCTCACGCCTTTCAAAA TTAAAAGAATTGTTATTTTTTCTCCCAAAATTCATGAGAAAACGCTACGAAGATGTTTCTAATTTGAGAAAAGAAAGCTA CGAGATATGCATTAATAGTTCTATGTTTTATTTTTCAACTAAAGAAGACGCTATTATAAAGCACTTGATTGCCGAAAATA AAGTGGGGGTTTTTTGCACCCACCCAATAGAATCTTCCTTTAGGACCGATTATAGAAAGAGAGGGGAAATTAGAAAAAGT TTTTACACGCATTTGTTCTATCCTAAAGAAGTGCCGCAATTTCTCTATGATTCAAATCAAGATTTTTTTCAGTCTTTTTT TAAGCATTTTAAAGGCGTGGATATAGGGTTTGTTGAACTTGAATTAAAACTCCCCATCGCTTTTGAATATGAAAAGTTTA AGAATATTCTAAAACCACCTTATGGCGTGTTGAATCTCGGAGCTAGCGATGATTCTAGAGTGTATAAACGCTTTGATGAG ATGATCTATTTTTTAAATCCTGACTACCAACTCGTTCTTTGCGGAAACTCTAAAAAAGATGAAGAGCTTGCCAATTCCAT TCTAAAACGCCACAAAAATGCCATTTCTTTAGTCAATCAAACCGGTTTGATAGAATACCTTTATCTTTTAAAGAACGCTA GTTTTGCGATGGGCAATGAGTCTTCCATCACGCATTTGAGCGCTTGTTTGAAAATCCCTTATGCGTTCATAGTCTCTTCG GGTCTCTCAAGCCCAAGATTCCACCCCTACCCAAAGGAAGTTGGCCCTAATATCCACATGATCTATCCAAGGGATTTTCA AAAAATAATTTCTAGGTCTAGCGACTGGATGTTTAAAGCCATGACTATGCCACACCCGCCAGTGGATTTTGTGAACCCGC AAGATATTATTAGCGCCATTAAACGTTTTGCGCCCCATCTCTTGAAAGAAGATGCGCCATCTAATACCAACGAAACAACC TATTTTGAACGAGTTTGA
Upstream 100 bases:
>100_bases TAGATTTGATAAGAGACTTTCTACTATAATCACACATTCGTTTATTCTTAATGTTTGCGTGGATTTTACATTGTTGAACA CTAAAAAATAGGAGCTGTTT
Downstream 100 bases:
>100_bases TTGCGTTATAAGTTTTTAGAGGATAACTTCAGCTTTAGATTGTAAAAGCATAAAAAGGAATTTTCTAACCACCACCAAAT TGAAAGCTTCTTTTCGCACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 485; Mature: 485
Protein sequence:
>485_residues MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIR KKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNATIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSK LKELLFFLPKFMRKRYEDVSNLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPPYGVLNLGASDDSRVYKRFDE MIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSS GLSSPRFHPYPKEVGPNIHMIYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT YFERV
Sequences:
>Translated_485_residues MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIR KKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNATIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSK LKELLFFLPKFMRKRYEDVSNLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPPYGVLNLGASDDSRVYKRFDE MIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSS GLSSPRFHPYPKEVGPNIHMIYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT YFERV >Mature_485_residues MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIRIQNQLDRLLTLTKPAPPPIR KKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNATIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSK LKELLFFLPKFMRKRYEDVSNLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPPYGVLNLGASDDSRVYKRFDE MIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQTGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSS GLSSPRFHPYPKEVGPNIHMIYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT YFERV
Specific function: Unknown
COG id: COG0859
COG function: function code M; ADP-heptose:LPS heptosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56945; Mature: 56945
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHH IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA HHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS HHHHHHHHEEECCCEEEEECCHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP HHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECCEEECHHHHHHHHCCC YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ CCEEECCCCCHHHHHHHHHHEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEE IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT ECCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC YFERV EEECC >Mature Secondary Structure MKSLLSLFLKSKLSYLYYCPYIAFVLMVATIAKIPLIQKIPVIRRFFNSRYSFQKDSLIR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHH IQNQLDRLLTLTKPAPPPIRKKTLCFIRLDIIGDYILYRNFLPLFKKYFEDYETTFIGNA HHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC TIKGIATHCDSQYIDKFIFLDNAYWEKYLRIGVNGSRLSKLKELLFFLPKFMRKRYEDVS HHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLRKESYEICINSSMFYFSTKEDAIIKHLIAENKVGVFCTHPIESSFRTDYRKRGEIRKS HHHHHHHHEEECCCEEEEECCHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHH FYTHLFYPKEVPQFLYDSNQDFFQSFFKHFKGVDIGFVELELKLPIAFEYEKFKNILKPP HHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECCEEECHHHHHHHHCCC YGVLNLGASDDSRVYKRFDEMIYFLNPDYQLVLCGNSKKDEELANSILKRHKNAISLVNQ CCEEECCCCCHHHHHHHHHHEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH TGLIEYLYLLKNASFAMGNESSITHLSACLKIPYAFIVSSGLSSPRFHPYPKEVGPNIHM HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCEEE IYPRDFQKIISRSSDWMFKAMTMPHPPVDFVNPQDIISAIKRFAPHLLKEDAPSNTNETT ECCHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC YFERV EEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA