| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15645791
GI number: 15645791
Start: 1243583
End: 1245508
Strand: Reverse
Name: Not Available
Synonym: HP1177
Alternate gene names: NA
Gene position: 1245508-1243583 (Counterclockwise)
Preceding gene: 15645792
Following gene: 15645790
Centisome position: 74.68
GC content: 40.5
Gene sequence:
>1926_bases ATGAAAAAAACGAAAAAAACGATTCTGCTTTCTCTAACTCTCGCGGCGTCATTGCTCCATGCTGAAGACAACGGCGTTTT TTTAAGCGTGGGTTATCAAATCGGTGAAGCGGTTCAAAAAGTGAAAAACGCCGACAAGGTGCAAAAACTTTCAGACACTT ATGAACAATTAAGCCGGCTTTTAACCAACGATAATGGCACAAACTCAAAGACAAGCGCGCAAGCGATCAACCAAGCGGTT AATAATTTGAACGAACGCGCAAAAACTTTAGCCGGTGGGACAACCAATTCCCCTGCCTATCAAGCCACGCTTTTAGCGTT GAGATCGGTGTTAGGGCTATGGAATAGCATGGGTTATGCGGTCATATGCGGAGGTTATACCAAAAGTCCAGGCGAAAACA ATCAAAAAGATTTCCACTACACCGATGAGAATGGCAATGGCACTACAATCAATTGCGGTGGGAGCACAAATAGTAATGGC ACTCATAGTTCTAGTGGCACAAATACATTAAAAGCAGACAAAAATGTTTCTCTATCTATTGAGCAATATGAAAAAATCCA TGAAGCTTATCAGATTCTTTCAAAAGCTTTAAAACAAGCCGGGCTTGCTCCTTTAAATAGCAAAGGGGAAAAGTTAGAAG CGCATGTAACCACATCAAAACCAGAAAATAATAGTCAAACTAAAACGACAACTTCTGTTATTGATACGACTAATGATGCG CAAAATCTTTTGACTCAAGCGCAAACGATTGTCAATACCCTTAAAGATTATTGCCCCATGTTGATAGCGAAATCTAGTAG TGAAAGTAGTGGCGCAGCTACTACAAACGCCCCTTCATGGCAAACAGCCGGTGGCGGCAAAAATTCATGTGCGACTTTTG GTGCGGAGTTTAGTGCCGCTTCAGACATGATTAATAATGCGCAAAAAATCGTTCAAGAAACCCAACAACTCAGCGCCAAC CAACCAAAAAATATCACACAACCCCATAATCTCAACCTTAACACCCCTAGCAGTCTTACGGCTTTAGCTCAAAAAATGCT CAAAAATGCGCAATCTCAAGCAGAAATTTTAAAACTAGCCAATCAAGTGGAGAGCGATTTTAACAAACTTTCTTCAGGCC ATCTTAAAGACTACATAGGGAAATGCGATGCGAGCGCTATAAGCAGTGCGAATATGACAATGCAAAATCAAAAGAACAAT TGGGGGAACGGGTGTGCTGGCGTGGAAGAAACTCTGTCTTCATTAAAAACAAGTGCCGCTGATTTTAACAACCAAACGCC ACAAATCAATCAAGCGCAAAACCTAGCCAACACCCTTATTCAAGAACTTGGCAACAACCCTTTTAGGAATATGGGCATGA TCGCTTCTTCAACCACGAATAACGGCGCCTTGAATGGCCTTGGGGTGCAAGTGGGTTATAAGCAATTTTTTGGGGAAAAG AAAAGATGGGGGTTAAGGTATTATGGTTTCTTTGATTACAACCACGCCTATATCAAATCCAATTTCTTTAACTCGGCTTC TGATGTGTGGACTTATGGGGTGGGCAGCGATTTATTGTTTAATTTCATCAATGATAAAAACACCAACTTTTTAGGCAAGA ATAACAAGATTTCAGTGGGATTTTTTGGAGGTATCGCCTTAGCAGGGACTTCATGGCTTAATTCTCAATTCGTGAATTTA AAAACCATCAGCAATGTTTATAGCGCTAAAGTGAATACGGCTAACTTCCAATTTTTATTCAATTTGGGCTTGAGAACCAA TCTCGCTAGACCTAAGAAAAAAGATAGTCATCATGCGGCTCAACATGGCATGGAATTGGGCGTGAAAATCCCTACCATTA ACACGAATTATTATTCTTTTCTAGACACTAAACTAGAATATCGAAGGCTTTATAGCGTGTATCTCAATTATGTGTTTGCC TATTAA
Upstream 100 bases:
>100_bases TTTTGAAATCCAATAAATTTATGTTATAATTAAACGCATTGTAAATAAATTCTCATTTTGATACATTTTTACAATAAAAC ATTACTTTAAGGAACATCTT
Downstream 100 bases:
>100_bases AAACCCTCTTTTTAAAAAAGGGGGGGCTTTAAAAAACCTCTAAAGATAAAAATTTTCAAAAAACAATCATTAAACCCTAA AAAAGAAATTTTAAGGTATA
Product: outer membrane protein (omp27)
Products: NA
Alternate protein names: Outer Membrane Protein HorA; Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein(Omp4) HopW Protein SabB; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Protein Adhesin; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Protein Omp; Outer Membrane Function; Outer Membrane Protein HorK; Outer Membrane Protein HopB; Outer Membrane Protein HorF; Adhesin; Outer Membrane Protein HopE; Outer Membrane Protein HorL; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HorB; Outer Membrane Protein HopF; Outer Membrane Protein HopG
Number of amino acids: Translated: 641; Mature: 641
Protein sequence:
>641_residues MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTNDNGTNSKTSAQAINQAV NNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNG THSSSGTNTLKADKNVSLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDA QNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSAN QPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNN WGNGCAGVEETLSSLKTSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEK KRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNL KTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFA Y
Sequences:
>Translated_641_residues MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTNDNGTNSKTSAQAINQAV NNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNG THSSSGTNTLKADKNVSLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDA QNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSAN QPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNN WGNGCAGVEETLSSLKTSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEK KRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNL KTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFA Y >Mature_641_residues MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRLLTNDNGTNSKTSAQAINQAV NNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNG THSSSGTNTLKADKNVSLSIEQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDA QNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAASDMINNAQKIVQETQQLSAN QPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNN WGNGCAGVEETLSSLKTSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEK KRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVGFFGGIALAGTSWLNSQFVNL KTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFA Y
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69692; Mature: 69692
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRL CCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE VICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSI EEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCEEEH EQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHEECCCHH QNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAA HHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHH SDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAA HHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHH DFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEK HCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCCCCCCEEEECHHHHCCCH KRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVG HCCCEEEEEEEECCCCEEECCCCCCCHHHEEECCCHHHHHHHHCCCCCCCCCCCCEEEEE FFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAA EECCHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHH QHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY HCCCCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKTKKTILLSLTLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYEQLSRL CCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYA HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE VICGGYTKSPGENNQKDFHYTDENGNGTTINCGGSTNSNGTHSSSGTNTLKADKNVSLSI EEECCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCEEEH EQYEKIHEAYQILSKALKQAGLAPLNSKGEKLEAHVTTSKPENNSQTKTTTSVIDTTNDA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHEECCCHH QNLLTQAQTIVNTLKDYCPMLIAKSSSESSGAATTNAPSWQTAGGGKNSCATFGAEFSAA HHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHH SDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLA HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH NQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAA HHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHH DFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEK HCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCCCCCCEEEECHHHHCCCH KRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNKISVG HCCCEEEEEEEECCCCEEECCCCCCCHHHEEECCCHHHHHHHHCCCCCCCCCCCCEEEEE FFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAA EECCHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHH QHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY HCCCCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA