Click here to switch to the map view.

The map label for this gene is gidA

Identifier: 15644841

GI number: 15644841

Start: 220259

End: 222124

Strand: Reverse

Name: gidA

Synonym: HP0213

Alternate gene names: 15644841

Gene position: 222124-220259 (Counterclockwise)

Preceding gene: 15644846

Following gene: 15644840

Centisome position: 13.32

GC content: 42.28

Gene sequence:

>1866_bases
GTGGTAAAAGAAAGTGATATTTTAGTGGTTGGTGGGGGGCATGCAGGCATTGAAGCGAGCTTGATTGCGGCTAAAATGGG
GGCTAGGGTGCATTTAATCACCATGCTCATAGACACGATCGGTTTAGCGAGCTGTAATCCGGCGATTGGGGGCTTGGGTA
AAGGGCATTTGACTAAAGAAGTGGATGTTTTAGGGGGGGCTATGGGGATTATTACGGATCATAGCGGTTTGCAATATCGT
GTGTTAAACGCTTCTAAAGGGCCGGCGGTTAGGGGGACTAGAGCGCAAATTGATATGGACACTTACCGCATTTTGGCAAG
AAATCTCGTTTTAAACACCCCTAATTTGAGCGTCTCTCAAGAAATGACCGAAAGTTTAATCCTTGAAAACGATGAGGTAG
TGGGCGTAACCACGAACATTAACAACACTTATAGAGCTAAAAAAGTGATCATCACCACAGGCACTTTTTTAAAAGGGGTG
GTGCATATTGGCGAGCACCAAAACCAAAACGGGCGCTTTGGGGAAAACGCTTCTAATTCTTTAGCCTTGAATTTAAGGGA
GCTTGGCTTTAAGGTGGATCGCCTAAAAACCGGCACTTGCCCAAGAGTGGCGGGCAATAGCATTGATTTTGAAGGCTTAG
AAGAGCATTTTGGGGACACAAACCCTCCCTATTTCAGCTATAAAACCAAAGATTTTAACCCCACCCAACTCTCATGTTTT
ATCACTTACACTAACCCCATTACCCACCAAATCATTAGGGATAATTTCCACCGAGCCCCCCTTTTTAGCGGTCAAATTGA
AGGCATAGGCCCAAGGTATTGCCCTAGCATTGAAGATAAAATCAACCGCTTTAGCGAAAAAGAACGCCACCAGCTGTTTT
TAGAGCCTCAAACCATCCATAAAAGCGAATATTATATCAACGGCTTAAGCACCTCTTTGCCCCTAGATGTGCAAGAAAAG
GTCATCCATTCTATCAAAGGCTTAGAAAACGCGCTCATCACGCGCTATGGCTATGCGATAGAGTATGATTTTATCCAGCC
CACGGAATTGACCCACACTTTAGAAACCAAAAAAATCAAAGGGCTTTATTTGGCCGGGCAAATCAATGGGACTACCGGCT
ATGAAGAAGCGGCGGCTCAAGGGCTTATGGCTGGGATTAATGCGGTATTAGCCCTAAAGAATCAAGCCCCCTTTATTTTA
AAGCGCAATGAAGCTTATATCGGCGTTTTGATTGATGATTTAATCACTAAAGGCACGAATGAACCTTACAGAATGTTTAC
CAGCCGAGCCGAATACCGCTTGCTTTTAAGAGAAGACAACACGCTTTTTAGATTAGGCGAACATGCCTATCGTTTAGGGC
TTATGGAAGAGGATTTTTATAAGGAATTAAAAAAAGATAAACAAGAGATACAAGACAATCTCAAACGCCTTAAAGAATAC
ATCCTTACCCCTAGTAAAGAAGTGTTAAAACGCTTGGATGAATTAGACGAAAACCCTATCAATGACAAGGTTGATGGCGT
TAGTTTGTTAGCGCGCGATAGTTTTAATGCAGAAAAAATGCGCTCCTTTTTCAGCTTTTTAGCCCCCTTGAACGAGCGGG
TTTTAGAGCAGATTAAGATTGAATGCAAATATAATATTTATATTGAAAAGCAACACGAAAATATCGCTAAAATGGATAGC
ATGCTCAAAGTTTCTATCCCTAAAGGTTTTGTGTTTAAAGGCATTCCAGGCTTAAGCTTAGAAGCGGTAGAAAAGTTAGA
AAAATTCCGCCCCAAAAGCCTTTTTGAAGCCTCAGAAATCAGCGGGATCACCCCAGCGAATTTAGACGTTTTGCATTTGT
ATATTCATTTGCGGAAAAACTCTTAA

Upstream 100 bases:

>100_bases
TCCATTTTATTTTACCCTTTAAAATTACTAACCTCCATGCTACAATAAAACTTTTTCAAAACTAAGATTTTAGAAAAATC
ATATCAAAATAGGAAAAAGA

Downstream 100 bases:

>100_bases
AGGATTGGCATGGACGCTTTAGAAATCACCCAAAAGCTCATCAGCTACCCCACCATTACGCCCAAAGAATGCGGTATTTT
TGAATACATTAAATCGCTTT

Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA

Products: NA

Alternate protein names: Glucose-inhibited division protein A [H]

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDHSGLQYR
VLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV
VHIGEHQNQNGRFGENASNSLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF
ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK
VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFIL
KRNEAYIGVLIDDLITKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDKQEIQDNLKRLKEY
ILTPSKEVLKRLDELDENPINDKVDGVSLLARDSFNAEKMRSFFSFLAPLNERVLEQIKIECKYNIYIEKQHENIAKMDS
MLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS

Sequences:

>Translated_621_residues
MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDHSGLQYR
VLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV
VHIGEHQNQNGRFGENASNSLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF
ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK
VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFIL
KRNEAYIGVLIDDLITKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDKQEIQDNLKRLKEY
ILTPSKEVLKRLDELDENPINDKVDGVSLLARDSFNAEKMRSFFSFLAPLNERVLEQIKIECKYNIYIEKQHENIAKMDS
MLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS
>Mature_621_residues
MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKEVDVLGGAMGIITDHSGLQYR
VLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQEMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGV
VHIGEHQNQNGRFGENASNSLALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF
ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEK
VIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFIL
KRNEAYIGVLIDDLITKGTNEPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDKQEIQDNLKRLKEY
ILTPSKEVLKRLDELDENPINDKVDGVSLLARDSFNAEKMRSFFSFLAPLNERVLEQIKIECKYNIYIEKQHENIAKMDS
MLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEISGITPANLDVLHLYIHLRKNS

Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]

COG id: COG0445

COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family [H]

Homologues:

Organism=Homo sapiens, GI74024895, Length=628, Percent_Identity=42.6751592356688, Blast_Score=432, Evalue=1e-121,
Organism=Homo sapiens, GI19882217, Length=653, Percent_Identity=41.3476263399694, Blast_Score=418, Evalue=1e-117,
Organism=Homo sapiens, GI183227703, Length=668, Percent_Identity=40.1197604790419, Blast_Score=413, Evalue=1e-115,
Organism=Escherichia coli, GI2367273, Length=612, Percent_Identity=48.202614379085, Blast_Score=592, Evalue=1e-170,
Organism=Caenorhabditis elegans, GI17534255, Length=619, Percent_Identity=39.5799676898223, Blast_Score=424, Evalue=1e-119,
Organism=Saccharomyces cerevisiae, GI6321202, Length=623, Percent_Identity=40.4494382022472, Blast_Score=434, Evalue=1e-122,
Organism=Drosophila melanogaster, GI24658174, Length=630, Percent_Identity=41.4285714285714, Blast_Score=442, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004416
- InterPro:   IPR002218
- InterPro:   IPR020595 [H]

Pfam domain/function: PF01134 GIDA [H]

EC number: NA

Molecular weight: Translated: 69685; Mature: 69685

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE
CCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQ
HHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHEEECCCCCHHH
EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS
HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCC
LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF
EEEEHHHHCCEEEHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEE
ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH
EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHEEEECCHHHC
KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHEEC
GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLITKGTN
EEEEEEEECCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEEEEHHHHHHCCCC
EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDKQEIQDNLKRLKEY
CHHHHHHCCCCEEEEEECCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ILTPSKEVLKRLDELDENPINDKVDGVSLLARDSFNAEKMRSFFSFLAPLNERVLEQIKI
HCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEE
ECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI
EEEEEEEEEECCCCHHHHHCEEEEECCCCEEECCCCCCCHHHHHHHHHCCCHHHCCHHHC
SGITPANLDVLHLYIHLRKNS
CCCCCCCCEEEEEEEEEECCC
>Mature Secondary Structure
MVKESDILVVGGGHAGIEASLIAAKMGARVHLITMLIDTIGLASCNPAIGGLGKGHLTKE
CCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
VDVLGGAMGIITDHSGLQYRVLNASKGPAVRGTRAQIDMDTYRILARNLVLNTPNLSVSQ
HHHHCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHEEECCCCCHHH
EMTESLILENDEVVGVTTNINNTYRAKKVIITTGTFLKGVVHIGEHQNQNGRFGENASNS
HHHHHHHCCCCCEEEEEECCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCC
LALNLRELGFKVDRLKTGTCPRVAGNSIDFEGLEEHFGDTNPPYFSYKTKDFNPTQLSCF
EEEEHHHHCCEEEHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEE
ITYTNPITHQIIRDNFHRAPLFSGQIEGIGPRYCPSIEDKINRFSEKERHQLFLEPQTIH
EEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHEEEECCHHHC
KSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTHTLETKKIK
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHEEC
GLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLIDDLITKGTN
EEEEEEEECCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEEEEHHHHHHCCCC
EPYRMFTSRAEYRLLLREDNTLFRLGEHAYRLGLMEEDFYKELKKDKQEIQDNLKRLKEY
CHHHHHHCCCCEEEEEECCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ILTPSKEVLKRLDELDENPINDKVDGVSLLARDSFNAEKMRSFFSFLAPLNERVLEQIKI
HCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEE
ECKYNIYIEKQHENIAKMDSMLKVSIPKGFVFKGIPGLSLEAVEKLEKFRPKSLFEASEI
EEEEEEEEEECCCCHHHHHCEEEEECCCCEEECCCCCCCHHHHHHHHHCCCHHHCCHHHC
SGITPANLDVLHLYIHLRKNS
CCCCCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA