| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15644734
GI number: 15644734
Start: 110928
End: 112673
Strand: Reverse
Name: Not Available
Synonym: HP0104
Alternate gene names: 15644734
Gene position: 112673-110928 (Counterclockwise)
Preceding gene: 161353440
Following gene: 15644733
Centisome position: 6.76
GC content: 38.89
Gene sequence:
>1746_bases ATGAAAAAATTGGTTTTAGTCATCTTTTTAACGCTAGCGCTTTCAATATCTGCAAAAGAAGTCAAAATAGTGTTTTTAGA AACTTCAGACATTCATGGGCGGCTTTTTTCGTATGATTATGCGATTGGCGAGCAAAAACCCAATAACGGCTTGACAAGGA TTGCGACTTTAATCAAAAAGCAAAGGGCTGAGAATAAAAATGTGGTTTTGATTGACAGCGGGGATTTGTTGCAAGGCAAT AGCGCGGAGTTGTTTAATGATGAGCCAATTCATCCGCTAGTTAGAGCTGAAAACGATTTGAAATTTGACATTCGTGTGCT TGGCAATCACGAGTTTAATTTCAGTAAAGATTTTTTAGAAAAGAATATTAAGGGGTTTAATGGCGATGTCATGAATGCGA ATATCATTAAAATTGCGGACAATAAGCCGTTTGTAAAACCTTATATTATTAAAAAAATTGATGGCGTGAGGGTGGCGGTT GTGGGGTATGTGGTGGCGCACATCCCAACTTGGGAGGCCTCTACGCCTGAACATTTTGCAGGATTGAAGTTTTTGGACGC TGAAGAAGCGTTAAAAAAGACCTTAAAAGAGTTGAAAGGGAAGTATGATATTTTGATTGGCGCTTTTCATTTGGGGCGAG AAGATGAGAAAGGTGGCGACGGGATACCGGATTTAGCGAAAAAATTCCCGCAATTTGACATCATTTTTGCAGGGCATGAG CATGCGGTTTATAACACCAAAGTAGGGAAAGTGCATACCATTGAGCCTGGAGCGTATGGGGCTTATCTGGCAAAGGGCGT GGTGGTATTTGACACTAAAACGAAGAAAAAAATTATAACGACTGAAAATTTACCCACAAAAGATGTGCCAGAAGATGAAG AATTAGCGAAAAAATACGAATATGTGGATAAAAAATCAAAAGAATACGCTAATGAAGTGGTTGGCGAAGTTACAAAAACC TTTATTGACAGGCCTGATTTTATCACAGGAGAAGAAAAAATCACCACGATGCCCACCGCCGCCTTGCAAGAAACACCGGT GATAGAATTGATTAATAAAGTGCAAAAATATTACGCAAAAGCCGATGTTTCAGCGGCAGCCTTATTCAATTTTGGGGCGA ATTTGAAAAAAGGGCCTTTCAAAAGAAAAGATGTCACTTATATTTACAAGTTCGCTAATACGCTCATTGGAGTGCGTATA ACGGGTGAAAATCTGTTGAAATACATGGAATGGTCATACCGATTTTACAATCAGTTGCAACCAGGAGATTTGACGATCAG TTTTAATGAAAACATTCGCGGCTATAACTTTGATATGTTTTCTGGCGTGAAATACCAGGTTGATGTTACAAAACCCGCCG GACAAAGGATTATCAATCCGACAATCAACAACAAACCCATTGACCCCAAAGCCATCTATAAATTAGCGATCAACAATTAC CGATTCGGAACATTATCCACGACATTGAATTTGGTTACAGACGCTGATAGGTATTATAATTCTTACGATGAACTGCAAGA TAATGGGCAAATACGAGATTTGATCATCAAATACATCACGGAAGAAAAAGGTGGGAAGGTAACCCCTGAATTGGAGGGTA ATTGGGAAATCATCAACTACGATTTCAAAAACCCGTTGTTGGAAAAATTGAGAGAAAAATTAAAAGAGGGGAGCATCAAA ATCCCCACCTCAAAGGATGGGAGGACTTTGAATGTCAAATCCATTAAAGAGAGTGAAGTTAAATAA
Upstream 100 bases:
>100_bases TTTTGCCCATAAGCGTTAAATTCCAATCAAAAACCATCGTATCGGTGTTAATATTGTGTAAAAATTAATGTTATGAATCT CTTGTATTAAAAGGACTTCA
Downstream 100 bases:
>100_bases AATTTTTTATTTTTATTATTTTATCTTTAAGCCTAACTTAAAAAAGGGTGTTCTATAATTTCAGCTTGTTTGTTCTTTTG TTTCGTTTTCAAACAACCGG
Product: 2',3'-cyclic-nucleotide 2'-phosphodiesterase
Products: NA
Alternate protein names: 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase; 5'-nucleotidase [H]
Number of amino acids: Translated: 581; Mature: 581
Protein sequence:
>581_residues MKKLVLVIFLTLALSISAKEVKIVFLETSDIHGRLFSYDYAIGEQKPNNGLTRIATLIKKQRAENKNVVLIDSGDLLQGN SAELFNDEPIHPLVRAENDLKFDIRVLGNHEFNFSKDFLEKNIKGFNGDVMNANIIKIADNKPFVKPYIIKKIDGVRVAV VGYVVAHIPTWEASTPEHFAGLKFLDAEEALKKTLKELKGKYDILIGAFHLGREDEKGGDGIPDLAKKFPQFDIIFAGHE HAVYNTKVGKVHTIEPGAYGAYLAKGVVVFDTKTKKKIITTENLPTKDVPEDEELAKKYEYVDKKSKEYANEVVGEVTKT FIDRPDFITGEEKITTMPTAALQETPVIELINKVQKYYAKADVSAAALFNFGANLKKGPFKRKDVTYIYKFANTLIGVRI TGENLLKYMEWSYRFYNQLQPGDLTISFNENIRGYNFDMFSGVKYQVDVTKPAGQRIINPTINNKPIDPKAIYKLAINNY RFGTLSTTLNLVTDADRYYNSYDELQDNGQIRDLIIKYITEEKGGKVTPELEGNWEIINYDFKNPLLEKLREKLKEGSIK IPTSKDGRTLNVKSIKESEVK
Sequences:
>Translated_581_residues MKKLVLVIFLTLALSISAKEVKIVFLETSDIHGRLFSYDYAIGEQKPNNGLTRIATLIKKQRAENKNVVLIDSGDLLQGN SAELFNDEPIHPLVRAENDLKFDIRVLGNHEFNFSKDFLEKNIKGFNGDVMNANIIKIADNKPFVKPYIIKKIDGVRVAV VGYVVAHIPTWEASTPEHFAGLKFLDAEEALKKTLKELKGKYDILIGAFHLGREDEKGGDGIPDLAKKFPQFDIIFAGHE HAVYNTKVGKVHTIEPGAYGAYLAKGVVVFDTKTKKKIITTENLPTKDVPEDEELAKKYEYVDKKSKEYANEVVGEVTKT FIDRPDFITGEEKITTMPTAALQETPVIELINKVQKYYAKADVSAAALFNFGANLKKGPFKRKDVTYIYKFANTLIGVRI TGENLLKYMEWSYRFYNQLQPGDLTISFNENIRGYNFDMFSGVKYQVDVTKPAGQRIINPTINNKPIDPKAIYKLAINNY RFGTLSTTLNLVTDADRYYNSYDELQDNGQIRDLIIKYITEEKGGKVTPELEGNWEIINYDFKNPLLEKLREKLKEGSIK IPTSKDGRTLNVKSIKESEVK >Mature_581_residues MKKLVLVIFLTLALSISAKEVKIVFLETSDIHGRLFSYDYAIGEQKPNNGLTRIATLIKKQRAENKNVVLIDSGDLLQGN SAELFNDEPIHPLVRAENDLKFDIRVLGNHEFNFSKDFLEKNIKGFNGDVMNANIIKIADNKPFVKPYIIKKIDGVRVAV VGYVVAHIPTWEASTPEHFAGLKFLDAEEALKKTLKELKGKYDILIGAFHLGREDEKGGDGIPDLAKKFPQFDIIFAGHE HAVYNTKVGKVHTIEPGAYGAYLAKGVVVFDTKTKKKIITTENLPTKDVPEDEELAKKYEYVDKKSKEYANEVVGEVTKT FIDRPDFITGEEKITTMPTAALQETPVIELINKVQKYYAKADVSAAALFNFGANLKKGPFKRKDVTYIYKFANTLIGVRI TGENLLKYMEWSYRFYNQLQPGDLTISFNENIRGYNFDMFSGVKYQVDVTKPAGQRIINPTINNKPIDPKAIYKLAINNY RFGTLSTTLNLVTDADRYYNSYDELQDNGQIRDLIIKYITEEKGGKVTPELEGNWEIINYDFKNPLLEKLREKLKEGSIK IPTSKDGRTLNVKSIKESEVK
Specific function: Catalyzes the release of inorganic phosphate from 2',3'- cyclic nucleotides through consecutive 2',3'-phosphodiesterase and 3'- (or 2') nucleotidase activities. Also possesses a 5'- nucleotidase activity. Does not catalyze the release of inorganic phospha
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Secreted, cell wall; Peptidoglycan-anchor (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Escherichia coli, GI1790658, Length=619, Percent_Identity=27.9483037156704, Blast_Score=203, Evalue=3e-53, Organism=Escherichia coli, GI1786687, Length=527, Percent_Identity=21.6318785578748, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI24641187, Length=507, Percent_Identity=21.1045364891519, Blast_Score=77, Evalue=3e-14,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR019931 - InterPro: IPR004843 - InterPro: IPR001899 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.6; =3.1.4.16; =3.1.3.5 [H]
Molecular weight: Translated: 65799; Mature: 65799
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS00786 5_NUCLEOTIDASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLVLVIFLTLALSISAKEVKIVFLETSDIHGRLFSYDYAIGEQKPNNGLTRIATLIKK CCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH QRAENKNVVLIDSGDLLQGNSAELFNDEPIHPLVRAENDLKFDIRVLGNHEFNFSKDFLE HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCHHHHH KNIKGFNGDVMNANIIKIADNKPFVKPYIIKKIDGVRVAVVGYVVAHIPTWEASTPEHFA HHCCCCCCCEECCEEEEEECCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHC GLKFLDAEEALKKTLKELKGKYDILIGAFHLGREDEKGGDGIPDLAKKFPQFDIIFAGHE CCEEECHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHCCCEEEEEECCC HAVYNTKVGKVHTIEPGAYGAYLAKGVVVFDTKTKKKIITTENLPTKDVPEDEELAKKYE CEEEECCCCEEEEECCCCCHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHH YVDKKSKEYANEVVGEVTKTFIDRPDFITGEEKITTMPTAALQETPVIELINKVQKYYAK HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHCCCCHHHHHHHHHHHHHH ADVSAAALFNFGANLKKGPFKRKDVTYIYKFANTLIGVRITGENLLKYMEWSYRFYNQLQ CCCHHHHHHHCCCCCCCCCCCCCCHHHHEEEHHHEEEEEECHHHHHHHHHHHHHHHCCCC PGDLTISFNENIRGYNFDMFSGVKYQVDVTKPAGQRIINPTINNKPIDPKAIYKLAINNY CCCEEEEECCCCCCCCEEHCCCEEEEEEECCCCCCEEECCCCCCCCCCHHHEEEEEECCE RFGTLSTTLNLVTDADRYYNSYDELQDNGQIRDLIIKYITEEKGGKVTPELEGNWEIINY EEEEHHHEEEEEECCHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEEE DFKNPLLEKLREKLKEGSIKIPTSKDGRTLNVKSIKESEVK CCCCHHHHHHHHHHHCCCEECCCCCCCCEEEECCCCCCCCC >Mature Secondary Structure MKKLVLVIFLTLALSISAKEVKIVFLETSDIHGRLFSYDYAIGEQKPNNGLTRIATLIKK CCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH QRAENKNVVLIDSGDLLQGNSAELFNDEPIHPLVRAENDLKFDIRVLGNHEFNFSKDFLE HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCHHHHH KNIKGFNGDVMNANIIKIADNKPFVKPYIIKKIDGVRVAVVGYVVAHIPTWEASTPEHFA HHCCCCCCCEECCEEEEEECCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHC GLKFLDAEEALKKTLKELKGKYDILIGAFHLGREDEKGGDGIPDLAKKFPQFDIIFAGHE CCEEECHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCHHHHHHCCCEEEEEECCC HAVYNTKVGKVHTIEPGAYGAYLAKGVVVFDTKTKKKIITTENLPTKDVPEDEELAKKYE CEEEECCCCEEEEECCCCCHHHHHCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHH YVDKKSKEYANEVVGEVTKTFIDRPDFITGEEKITTMPTAALQETPVIELINKVQKYYAK HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHCCCCHHHHHHHHHHHHHH ADVSAAALFNFGANLKKGPFKRKDVTYIYKFANTLIGVRITGENLLKYMEWSYRFYNQLQ CCCHHHHHHHCCCCCCCCCCCCCCHHHHEEEHHHEEEEEECHHHHHHHHHHHHHHHCCCC PGDLTISFNENIRGYNFDMFSGVKYQVDVTKPAGQRIINPTINNKPIDPKAIYKLAINNY CCCEEEEECCCCCCCCEEHCCCEEEEEEECCCCCCEEECCCCCCCCCCHHHEEEEEECCE RFGTLSTTLNLVTDADRYYNSYDELQDNGQIRDLIIKYITEEKGGKVTPELEGNWEIINY EEEEHHHEEEEEECCHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCEECCCCCCCEEEEEE DFKNPLLEKLREKLKEGSIKIPTSKDGRTLNVKSIKESEVK CCCCHHHHHHHHHHHCCCEECCCCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969503; 9384377 [H]