| Definition | Helicobacter pylori 26695, complete genome. |
|---|---|
| Accession | NC_000915 |
| Length | 1,667,867 |
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Identifier: 15644685
GI number: 15644685
Start: 53715
End: 56186
Strand: Reverse
Name: Not Available
Synonym: HP0054
Alternate gene names: 15644685
Gene position: 56186-53715 (Counterclockwise)
Preceding gene: 15644686
Following gene: 15644684
Centisome position: 3.37
GC content: 32.93
Gene sequence:
>2472_bases ATGCTCTTTGATCAAACCTTAACCTATATTTCTTTATTTTCTGGGGCAGGAGTGGGGTGCTATGGGCTTTTAGAAGAGGG GTTTGAATGCGTTGCTACCAATGAAATTTTAGAAAAACGCTTGAATATCCAAAGGATTAATCGCAAATGCAAATTAGATG AAAGCTACATTAGTGGGGACATTAAAAAGCCAGAAACAAAAGAAAAAATTTTAAAGCAAATTGAATTTTATTCTAAAAAA TTTGGTAATGATAGGGTTGATTTAGTGGTAGCAACCCCACCTTGTCAAGGCATGAGCGTAGCCAATCATAAGAAGAAAAA CGATGAGATCAAACGGAATTCTTTGGTGGTTGAAAGCATTGATTTGATCAAACAAATCAAACCCAGATTTTTTATTTTAG AAAATGTCCCTAGTTTTTATAAAACAGGTTGTATAGACAAAAATGATAATTTGCTAGAAATAGGATCTATGATAGAGCAA AATTTGAGTGGCGATTATATGCTCTATGATGAGGTAATCAATTTTAAAAATTTTGGAGCTAATTCAAGCCGAACAAGAAC TTTAGTGATAGGGGTTTGTAAAGAGTTTAAAGATTTTATAAGCGCGTTAGAATTTTTTCCTGATTTCAAACAAGAAAAAA CCTTAAAAGAAGTGATAGGATCGTTAAAACCACTTGCTTGGGGCGAGTATGACAACACGGATTTTTATCATAGTTTTAGA ACTTATCCAAAGCATATGCAAGAATGGATTAAGGATTTAAAAGAAGGACAAAGCGCGTTTGAGAATACAGAATTAAACAA AAAACCTCATAGAATTGTTGGCAGTAAGATTGTCTTAAATGTTTCTAAAAATGGCGATAAATATAAAAGACAAAAATATC ATAGCGTTGCCCCTTGCATTCATACAAGAAACGACCAAATGGCTAGCCAAAACACGATCCACCCCAAAGATGATAGAGTG TTTTCCATTAGAGAGCTGATGCTTTTAATGAATATCCCTAGCCGTTTTAAGTGGTTAGATTTAGAATTACAAGAATTAAA CGCCCTTAACCAACAAGAAAAAGAAAAAATCTCCAAACAAAACGAAATGAATATAAGACAAAGCATCGGTGAAGCTGTTC CAACGATTATTTTTAAGCAAATTGCCATAAAGATAAAAAATTTCATGTCTCAAACCCACTTAGAGCCTAAAGAAATCATT AGGCTTATTGATGTGCACCATTTATTAGAGCCACAAAATTTGAAGCGATTTATTTTAGAAAATCAAAACAAGATTGCAAG AGCGAGTTTAGTGAGTTTGGCAGAAATGTCTAATTCTAAACGCATAGAAAAAAGCGCGTATTTTACAAACCCTTTTATTA TTAATGAAATAGCGAAGTTATTGCCAAGCTTTAAACAAGAGAGTGTTACTATTATAGAGCCAAGTGCAGGGTGTGGGAAT TTCTTAAGTGCTCTTTTTAAAAAATACACTTCTGTTAAAAAAGTTTATTTAAAGTGTATAGATATTGATAAAAATAGTTT AGAAATTTTAGAGATTTTATATAAAGATTGCATTCCTAACAATTTTGAGATGGAATTGATTTGCAAAGATTTTCTAGCCT ATGAATGCGGCAAAGTGGATTTAATTGTGGGCAATCCGCCTTTTGGCAAAACGCATGAAAGATTCAAAGATTATAGTTTA AGACTCACTCATTTAGCAGGGATTTTTTTAGAAAAGTCTTTAAAACTAGCCAACTTTACAGCGATGGTTATGCCTAAAAA CCTTTTAAACACTAAAGAGTATGCAGAAACTAGAACTAAGCTTGAAAAAAAGGGAGTAGGAGCGATTTTAGACTTTGGCG AGCTTGGTTTTAAGGGTGTTTTGGTAGAAACAATTGCTATTGTTACACAAAAATCAAAAGAAGTTTTAGCGCGTTCGTTA CCCCTAAATCTAAGCATCAAGCAAAAGCCAAGCTATATTTTTGACAAACAATTGCCCTATTGGGTTATCTATCGCAACGC TTTTTTTGATAAGGTGTTTCATTCCATGCAGTTTGGTCTTTTTGAAGTGTTTAGAGACAGACAAATCACTAATTCTGTGT TGGTTAAAAATGGTATTCGTGTGATTAAATCTCGCAATATTGATGAAAACGGAAAGATTATTAGCATTGAAAATTACGAT AGCTACATTCAAAAAGAGGTTTTAAGTCCGTTTAAGATAGCTTCATTTTTAGACAGAGATGATGTCTATTTAACCCCCAA CATGACCTATAAGCCAAGGATTTTAAAAAAAGAAAAAGGCTATGTGGTTAATGGCTCTGTGGCTATTTTAATCCCTAAAA ACCCCATATCTTTAAGCAAGAAACAATGCGATTATATCTCTAGCGTTGAATTTAGAGATTTTTATAAAATCGCTAGGAAT TATCAAACGCGCACCTTAAATATTGATAGCATGAGTTGTTTTTGGTTTGGAATTTTAAGGAGTAGCTTATGA
Upstream 100 bases:
>100_bases CGAACAGGCACTAAAGAGGCTTTTGAAACCATGCTTAAAGAAATTGAGAGCTTGAAACATTAATGCTTCAAATGAATTTG GTTTAATCCTTAATCCCCTT
Downstream 100 bases:
>100_bases AAGAGCAATCAATGATTGATTTTTTAAAACTTAGAGATTATGACATTAGAAAAACACAAAATGCGCGATGGATAGATCAA AAATGCACCCCTGATGTGTT
Product: adenine/cytosine DNA methyltransferase
Products: NA
Alternate protein names: M.HgaIA; Cytosine-specific methyltransferase HgaIA; M.HgaI-1 [H]
Number of amino acids: Translated: 823; Mature: 823
Protein sequence:
>823_residues MLFDQTLTYISLFSGAGVGCYGLLEEGFECVATNEILEKRLNIQRINRKCKLDESYISGDIKKPETKEKILKQIEFYSKK FGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVESIDLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQ NLSGDYMLYDEVINFKNFGANSSRTRTLVIGVCKEFKDFISALEFFPDFKQEKTLKEVIGSLKPLAWGEYDNTDFYHSFR TYPKHMQEWIKDLKEGQSAFENTELNKKPHRIVGSKIVLNVSKNGDKYKRQKYHSVAPCIHTRNDQMASQNTIHPKDDRV FSIRELMLLMNIPSRFKWLDLELQELNALNQQEKEKISKQNEMNIRQSIGEAVPTIIFKQIAIKIKNFMSQTHLEPKEII RLIDVHHLLEPQNLKRFILENQNKIARASLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGN FLSALFKKYTSVKKVYLKCIDIDKNSLEILEILYKDCIPNNFEMELICKDFLAYECGKVDLIVGNPPFGKTHERFKDYSL RLTHLAGIFLEKSLKLANFTAMVMPKNLLNTKEYAETRTKLEKKGVGAILDFGELGFKGVLVETIAIVTQKSKEVLARSL PLNLSIKQKPSYIFDKQLPYWVIYRNAFFDKVFHSMQFGLFEVFRDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYD SYIQKEVLSPFKIASFLDRDDVYLTPNMTYKPRILKKEKGYVVNGSVAILIPKNPISLSKKQCDYISSVEFRDFYKIARN YQTRTLNIDSMSCFWFGILRSSL
Sequences:
>Translated_823_residues MLFDQTLTYISLFSGAGVGCYGLLEEGFECVATNEILEKRLNIQRINRKCKLDESYISGDIKKPETKEKILKQIEFYSKK FGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVESIDLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQ NLSGDYMLYDEVINFKNFGANSSRTRTLVIGVCKEFKDFISALEFFPDFKQEKTLKEVIGSLKPLAWGEYDNTDFYHSFR TYPKHMQEWIKDLKEGQSAFENTELNKKPHRIVGSKIVLNVSKNGDKYKRQKYHSVAPCIHTRNDQMASQNTIHPKDDRV FSIRELMLLMNIPSRFKWLDLELQELNALNQQEKEKISKQNEMNIRQSIGEAVPTIIFKQIAIKIKNFMSQTHLEPKEII RLIDVHHLLEPQNLKRFILENQNKIARASLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGN FLSALFKKYTSVKKVYLKCIDIDKNSLEILEILYKDCIPNNFEMELICKDFLAYECGKVDLIVGNPPFGKTHERFKDYSL RLTHLAGIFLEKSLKLANFTAMVMPKNLLNTKEYAETRTKLEKKGVGAILDFGELGFKGVLVETIAIVTQKSKEVLARSL PLNLSIKQKPSYIFDKQLPYWVIYRNAFFDKVFHSMQFGLFEVFRDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYD SYIQKEVLSPFKIASFLDRDDVYLTPNMTYKPRILKKEKGYVVNGSVAILIPKNPISLSKKQCDYISSVEFRDFYKIARN YQTRTLNIDSMSCFWFGILRSSL >Mature_823_residues MLFDQTLTYISLFSGAGVGCYGLLEEGFECVATNEILEKRLNIQRINRKCKLDESYISGDIKKPETKEKILKQIEFYSKK FGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVESIDLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQ NLSGDYMLYDEVINFKNFGANSSRTRTLVIGVCKEFKDFISALEFFPDFKQEKTLKEVIGSLKPLAWGEYDNTDFYHSFR TYPKHMQEWIKDLKEGQSAFENTELNKKPHRIVGSKIVLNVSKNGDKYKRQKYHSVAPCIHTRNDQMASQNTIHPKDDRV FSIRELMLLMNIPSRFKWLDLELQELNALNQQEKEKISKQNEMNIRQSIGEAVPTIIFKQIAIKIKNFMSQTHLEPKEII RLIDVHHLLEPQNLKRFILENQNKIARASLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGN FLSALFKKYTSVKKVYLKCIDIDKNSLEILEILYKDCIPNNFEMELICKDFLAYECGKVDLIVGNPPFGKTHERFKDYSL RLTHLAGIFLEKSLKLANFTAMVMPKNLLNTKEYAETRTKLEKKGVGAILDFGELGFKGVLVETIAIVTQKSKEVLARSL PLNLSIKQKPSYIFDKQLPYWVIYRNAFFDKVFHSMQFGLFEVFRDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYD SYIQKEVLSPFKIASFLDRDDVYLTPNMTYKPRILKKEKGYVVNGSVAILIPKNPISLSKKQCDYISSVEFRDFYKIARN YQTRTLNIDSMSCFWFGILRSSL
Specific function: This methylase recognizes the strands carrying the 5'- GCGTC-3' sequence, causes specific methylation on C-2, and protects the DNA from cleavage by the HgaI endonuclease [H]
COG id: COG0827
COG function: function code L; Adenine-specific DNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the C5-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018117 - InterPro: IPR001525 [H]
Pfam domain/function: PF00145 DNA_methylase [H]
EC number: =2.1.1.37 [H]
Molecular weight: Translated: 95116; Mature: 95116
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: PS00092 N6_MTASE ; PS00094 C5_MTASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFDQTLTYISLFSGAGVGCYGLLEEGFECVATNEILEKRLNIQRINRKCKLDESYISGD CCCHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHCCC IKKPETKEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVESI CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHH DLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQNLSGDYMLYDEVINFKNFGA HHHHHCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHCCCC NSSRTRTLVIGVCKEFKDFISALEFFPDFKQEKTLKEVIGSLKPLAWGEYDNTDFYHSFR CCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH TYPKHMQEWIKDLKEGQSAFENTELNKKPHRIVGSKIVLNVSKNGDKYKRQKYHSVAPCI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCEEEEEECCCCCHHHHHHHHHHCCHH HTRNDQMASQNTIHPKDDRVFSIRELMLLMNIPSRFKWLDLELQELNALNQQEKEKISKQ CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCHHHHHHHHHH NEMNIRQSIGEAVPTIIFKQIAIKIKNFMSQTHLEPKEIIRLIDVHHLLEPQNLKRFILE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHC NQNKIARASLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGN CCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHH FLSALFKKYTSVKKVYLKCIDIDKNSLEILEILYKDCIPNNFEMELICKDFLAYECGKVD HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEE LIVGNPPFGKTHERFKDYSLRLTHLAGIFLEKSLKLANFTAMVMPKNLLNTKEYAETRTK EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCHHHHCHHHHHHHHHH LEKKGVGAILDFGELGFKGVLVETIAIVTQKSKEVLARSLPLNLSIKQKPSYIFDKQLPY HHHCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCE WVIYRNAFFDKVFHSMQFGLFEVFRDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYD EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHH SYIQKEVLSPFKIASFLDRDDVYLTPNMTYKPRILKKEKGYVVNGSVAILIPKNPISLSK HHHHHHHCCHHHHHHHCCCCCEEECCCCCCCCCCEECCCCEEECCEEEEEECCCCCCCCH KQCDYISSVEFRDFYKIARNYQTRTLNIDSMSCFWFGILRSSL HHHHHHHCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCC >Mature Secondary Structure MLFDQTLTYISLFSGAGVGCYGLLEEGFECVATNEILEKRLNIQRINRKCKLDESYISGD CCCHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHCCC IKKPETKEKILKQIEFYSKKFGNDRVDLVVATPPCQGMSVANHKKKNDEIKRNSLVVESI CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHH DLIKQIKPRFFILENVPSFYKTGCIDKNDNLLEIGSMIEQNLSGDYMLYDEVINFKNFGA HHHHHCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHCCCC NSSRTRTLVIGVCKEFKDFISALEFFPDFKQEKTLKEVIGSLKPLAWGEYDNTDFYHSFR CCCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH TYPKHMQEWIKDLKEGQSAFENTELNKKPHRIVGSKIVLNVSKNGDKYKRQKYHSVAPCI HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEECCEEEEEECCCCCHHHHHHHHHHCCHH HTRNDQMASQNTIHPKDDRVFSIRELMLLMNIPSRFKWLDLELQELNALNQQEKEKISKQ CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHCCHHHHHHHHHH NEMNIRQSIGEAVPTIIFKQIAIKIKNFMSQTHLEPKEIIRLIDVHHLLEPQNLKRFILE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHC NQNKIARASLVSLAEMSNSKRIEKSAYFTNPFIINEIAKLLPSFKQESVTIIEPSAGCGN CCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHH FLSALFKKYTSVKKVYLKCIDIDKNSLEILEILYKDCIPNNFEMELICKDFLAYECGKVD HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEE LIVGNPPFGKTHERFKDYSLRLTHLAGIFLEKSLKLANFTAMVMPKNLLNTKEYAETRTK EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCHHHHCHHHHHHHHHH LEKKGVGAILDFGELGFKGVLVETIAIVTQKSKEVLARSLPLNLSIKQKPSYIFDKQLPY HHHCCCCEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCE WVIYRNAFFDKVFHSMQFGLFEVFRDRQITNSVLVKNGIRVIKSRNIDENGKIISIENYD EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHH SYIQKEVLSPFKIASFLDRDDVYLTPNMTYKPRILKKEKGYVVNGSVAILIPKNPISLSK HHHHHHHCCHHHHHHHCCCCCEEECCCCCCCCCCEECCCCEEECCEEEEEECCCCCCCCH KQCDYISSVEFRDFYKIARNYQTRTLNIDSMSCFWFGILRSSL HHHHHHHCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1856224 [H]