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The map label for this gene is nodC

Identifier: 16519763

GI number: 16519763

Start: 435761

End: 437002

Strand: Direct

Name: nodC

Synonym: NGR_a03430

Alternate gene names: 16519763

Gene position: 435761-437002 (Clockwise)

Preceding gene: 16519764

Following gene: 16519762

Centisome position: 81.27

GC content: 59.34

Gene sequence:

>1242_bases
ATGGATCTGCTTGGCACGACCGGCGCCGTAGCCATCTCCTTGTATGCAGCACTCTCGACGGCTTACAAAGGCATGCAAGC
TATATACGCTTTGCCAACAAACACCACAGCTGCGTCAACGCCCGTGACCGGCTCCGGTGCACCGCCGAGCGTGGATGTTA
TCGTACCCTGCTACAATGAGGATCCGCGCGCGCTCTCGGCGTGCCTAGCTTCCATTGCAAAGCAGGACTACGCTGGAGAG
TTGCGGGTCTACGTGGTTGACGACGGTTCTGGCAATCGCAACGCCATCATACCTGTACACGATCATTATGCGTGCGACCC
GAGGTTCCGCTTTATCCTGATGCCAAAGAACGTCGGAAAGCGCAAGGCGCAGATTGTCGCGATACGGGAATCATCGGGAG
ATTTGGTGCTCAACGTTGACTCGGACACGACCATTGCGCCGGACGTAGTCACGAAACTTGCCCTGAAGATGTACAGTCCC
GCGGTCGGCGCGGCGATGGGTCAGTTGACGGCCAGCAACCGCAGCGACACATGGCTGACGCGGTTGATCGACATGGAGTA
CTGGCTCGCCTGCAACGAGGAACGCGCAGCACAGGCTCGCTTTGGAGCCGTTATGTGTTGCTGCGGCCCGTGTGCCATGT
ACCGGCGGTCCGCACTCCTATTGCTGCTCGATAAATACGAGACGCAACTGTTTCGAGGCAGGCCAAGCGACTTCGGGGAA
GACCGCCACCTCACAATCCTCATGCTGAATGCAGGCTTTCGAACCGAGTACGTTCCGGAAGCCATCGCGGCGACGGTCGT
TCCAAACTCGATGGGCGCCTATCTGCGCCAACAACTGCGCTGGGCACGCAGCACGTTTCGCGACACATTGCTCGCGCTCC
GCCTACTGCCGGGCCTTGATCGCTATCTTACGCTGGACGTGATCGGACAGAATCTTGGTCCGCTGCTCCTAGCCCTCTCG
GTCCTGACGGGGCTAGCACAGCTCGCTCTGACGGCCACAGTGCCTTGGTCGACGATCCTGATGATTGCATCTATGACAAT
GGTCCGCTGCGGCGTGGCGGCGTTTCGAGCGCGAGAGCTGCGATTCCTTGGGTTTTCGCTGCACACCCTCCTCAACGTCG
CTCTCCTGCTCCCCCTCAAAGCATATGCGTTGTGCACGTTGAGCAACAGCGACTGGCTGTCGCGTGGTTCCCCGGCTGCC
GCACCCAACGGCGTAAAGGATTCTCCTGAACCCCATTGCTAA

Upstream 100 bases:

>100_bases
ACCAGACGGTGGCGGCGTTGTCTCGTCTCATCCCTGCCTTGCACGACCGCGGATTTATAATCCGCTCGCTTCCTCAGAAT
CATTAAACGGACGGTTTTTC

Downstream 100 bases:

>100_bases
AACAAGCGCTGCGGAGCCGTCTGAAACTGCGGCACCCGCGTCGCTGGCTCAGTCTTGCGCAGCTTGCGAGGCTGCTGACA
TCAGTCAGTCACTGCGGTGA

Product: N-acetylglucosaminyltransferase

Products: NA

Alternate protein names: Nodulation protein C

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MDLLGTTGAVAISLYAALSTAYKGMQAIYALPTNTTAASTPVTGSGAPPSVDVIVPCYNEDPRALSACLASIAKQDYAGE
LRVYVVDDGSGNRNAIIPVHDHYACDPRFRFILMPKNVGKRKAQIVAIRESSGDLVLNVDSDTTIAPDVVTKLALKMYSP
AVGAAMGQLTASNRSDTWLTRLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALLLLLDKYETQLFRGRPSDFGE
DRHLTILMLNAGFRTEYVPEAIAATVVPNSMGAYLRQQLRWARSTFRDTLLALRLLPGLDRYLTLDVIGQNLGPLLLALS
VLTGLAQLALTATVPWSTILMIASMTMVRCGVAAFRARELRFLGFSLHTLLNVALLLPLKAYALCTLSNSDWLSRGSPAA
APNGVKDSPEPHC

Sequences:

>Translated_413_residues
MDLLGTTGAVAISLYAALSTAYKGMQAIYALPTNTTAASTPVTGSGAPPSVDVIVPCYNEDPRALSACLASIAKQDYAGE
LRVYVVDDGSGNRNAIIPVHDHYACDPRFRFILMPKNVGKRKAQIVAIRESSGDLVLNVDSDTTIAPDVVTKLALKMYSP
AVGAAMGQLTASNRSDTWLTRLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALLLLLDKYETQLFRGRPSDFGE
DRHLTILMLNAGFRTEYVPEAIAATVVPNSMGAYLRQQLRWARSTFRDTLLALRLLPGLDRYLTLDVIGQNLGPLLLALS
VLTGLAQLALTATVPWSTILMIASMTMVRCGVAAFRARELRFLGFSLHTLLNVALLLPLKAYALCTLSNSDWLSRGSPAA
APNGVKDSPEPHC
>Mature_413_residues
MDLLGTTGAVAISLYAALSTAYKGMQAIYALPTNTTAASTPVTGSGAPPSVDVIVPCYNEDPRALSACLASIAKQDYAGE
LRVYVVDDGSGNRNAIIPVHDHYACDPRFRFILMPKNVGKRKAQIVAIRESSGDLVLNVDSDTTIAPDVVTKLALKMYSP
AVGAAMGQLTASNRSDTWLTRLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALLLLLDKYETQLFRGRPSDFGE
DRHLTILMLNAGFRTEYVPEAIAATVVPNSMGAYLRQQLRWARSTFRDTLLALRLLPGLDRYLTLDVIGQNLGPLLLALS
VLTGLAQLALTATVPWSTILMIASMTMVRCGVAAFRARELRFLGFSLHTLLNVALLLPLKAYALCTLSNSDWLSRGSPAA
APNGVKDSPEPHC

Specific function: Involved in the synthesis of Nod factor, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nodC/HAS family

Homologues:

Organism=Homo sapiens, GI4885391, Length=441, Percent_Identity=26.0770975056689, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI20302153, Length=404, Percent_Identity=28.4653465346535, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI167466171, Length=293, Percent_Identity=32.4232081911263, Blast_Score=132, Evalue=5e-31,
Organism=Escherichia coli, GI1787259, Length=251, Percent_Identity=27.0916334661355, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI86561407, Length=171, Percent_Identity=29.8245614035088, Blast_Score=72, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6319497, Length=221, Percent_Identity=27.1493212669683, Blast_Score=78, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NODC_RHISN (P50357)

Other databases:

- EMBL:   X73362
- EMBL:   U00090
- PIR:   S34305
- RefSeq:   NP_443883.1
- ProteinModelPortal:   P50357
- GeneID:   962559
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03430
- HOGENOM:   HBG334849
- ProtClustDB:   CLSK864445
- GO:   GO:0009877
- InterPro:   IPR001173

Pfam domain/function: PF00535 Glycos_transf_2

EC number: NA

Molecular weight: Translated: 44726; Mature: 44726

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLGTTGAVAISLYAALSTAYKGMQAIYALPTNTTAASTPVTGSGAPPSVDVIVPCYNE
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
DPRALSACLASIAKQDYAGELRVYVVDDGSGNRNAIIPVHDHYACDPRFRFILMPKNVGK
CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCC
RKAQIVAIRESSGDLVLNVDSDTTIAPDVVTKLALKMYSPAVGAAMGQLTASNRSDTWLT
CEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHH
RLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALLLLLDKYETQLFRGRPSDFGE
HHHHHHHHEECCHHHHHHHHHCEEEECCCHHHHHHHHHHEEEHHHHHHHHHCCCCCCCCC
DRHLTILMLNAGFRTEYVPEAIAATVVPNSMGAYLRQQLRWARSTFRDTLLALRLLPGLD
CCEEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYLTLDVIGQNLGPLLLALSVLTGLAQLALTATVPWSTILMIASMTMVRCGVAAFRAREL
CEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFLGFSLHTLLNVALLLPLKAYALCTLSNSDWLSRGSPAAAPNGVKDSPEPHC
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLLGTTGAVAISLYAALSTAYKGMQAIYALPTNTTAASTPVTGSGAPPSVDVIVPCYNE
CCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
DPRALSACLASIAKQDYAGELRVYVVDDGSGNRNAIIPVHDHYACDPRFRFILMPKNVGK
CHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCCC
RKAQIVAIRESSGDLVLNVDSDTTIAPDVVTKLALKMYSPAVGAAMGQLTASNRSDTWLT
CEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHH
RLIDMEYWLACNEERAAQARFGAVMCCCGPCAMYRRSALLLLLDKYETQLFRGRPSDFGE
HHHHHHHHEECCHHHHHHHHHCEEEECCCHHHHHHHHHHEEEHHHHHHHHHCCCCCCCCC
DRHLTILMLNAGFRTEYVPEAIAATVVPNSMGAYLRQQLRWARSTFRDTLLALRLLPGLD
CCEEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYLTLDVIGQNLGPLLLALSVLTGLAQLALTATVPWSTILMIASMTMVRCGVAAFRAREL
CEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFLGFSLHTLLNVALLLPLKAYALCTLSNSDWLSRGSPAAAPNGVKDSPEPHC
HHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7984092; 9163424