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The map label for this gene is traH

Identifier: 16519705

GI number: 16519705

Start: 518072

End: 518674

Strand: Direct

Name: traH

Synonym: NGR_a04010

Alternate gene names: NA

Gene position: 518072-518674 (Clockwise)

Preceding gene: 16519706

Following gene: 16519698

Centisome position: 96.63

GC content: 59.04

Gene sequence:

>603_bases
ATGCTCGACGCTGCCCTAATCAAAGAATGCGCCGATCCTTCTCTCAAGCCCGCGATCGTCGAGCAGTTCGTCGCAGCCGC
CGGCTCGACGGACCCGCTCGCCGTTTCAGTTGAATCGGGTGGACGATTGATCCTCGTGCCGAAAGCGACTTCCGCCGGCG
AGGCGATGGCAATCGTGAGGCAATATGTGGGTCAGGCGGTGGTTCGCGTCGGCCTGACACAGTTTCCAGTGGGCGTCGGC
GTGAAGAACGCAGCAGACCTTCAGCCGGACCTCGTCGACGCCTGCGAAAACCTTCGCAAGGGAACCTCGATGTTTGCCAA
GGTTCTTAGGATCGTTGCCAAGTCGTATGGCAATCCCGAGAGCGACGACGTCATCCCTCAAATATTCGAGGATGCTGTCT
ACGCATGGAAGACGGGTGAGTTCGAAGGCGTGAGCGTGTTTCAGGCTCCTGATCCGGGTGGCAGCGTTGCGACGGAAGAA
GTGTTGCGGTCGGATGACCGCGATAGTCATACTCAAGACTCGGCCTCTGAATGGCCTGAGGGAAACGACAGCGTTGGATC
GGCAGCAATGCGGATCGATCTTTCCCGCATCGGGGGAACGTGA

Upstream 100 bases:

>100_bases
TCCATCGTCGCGATTCAGCGAGTCAACGCGATCGCTTGGGCAAAGCTGTTCGCGAAACCGCTTGTTCTTTCCTTCAACAC
CTGAAGCCCGAGGAGACGTC

Downstream 100 bases:

>100_bases
GGCCTAACCCGAATCTCTCAGTGCGCCCCGATGGCGCGTATCACCAGTGGAGGAAGGTTCCACCCAGATAGTTGTCGATA
GGGGTAGCTAGCGACCGGTT

Product: conjugal transfer protein TraH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLDAALIKECADPSLKPAIVEQFVAAAGSTDPLAVSVESGGRLILVPKATSAGEAMAIVRQYVGQAVVRVGLTQFPVGVG
VKNAADLQPDLVDACENLRKGTSMFAKVLRIVAKSYGNPESDDVIPQIFEDAVYAWKTGEFEGVSVFQAPDPGGSVATEE
VLRSDDRDSHTQDSASEWPEGNDSVGSAAMRIDLSRIGGT

Sequences:

>Translated_200_residues
MLDAALIKECADPSLKPAIVEQFVAAAGSTDPLAVSVESGGRLILVPKATSAGEAMAIVRQYVGQAVVRVGLTQFPVGVG
VKNAADLQPDLVDACENLRKGTSMFAKVLRIVAKSYGNPESDDVIPQIFEDAVYAWKTGEFEGVSVFQAPDPGGSVATEE
VLRSDDRDSHTQDSASEWPEGNDSVGSAAMRIDLSRIGGT
>Mature_200_residues
MLDAALIKECADPSLKPAIVEQFVAAAGSTDPLAVSVESGGRLILVPKATSAGEAMAIVRQYVGQAVVRVGLTQFPVGVG
VKNAADLQPDLVDACENLRKGTSMFAKVLRIVAKSYGNPESDDVIPQIFEDAVYAWKTGEFEGVSVFQAPDPGGSVATEE
VLRSDDRDSHTQDSASEWPEGNDSVGSAAMRIDLSRIGGT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid conjugal transfer region I ORFR2 and ORFR3

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4DP_RHISN (P55415)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443825.1
- GeneID:   962278
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04010
- HOGENOM:   HBG300446
- ProtClustDB:   PRK13843
- InterPro:   IPR010680

Pfam domain/function: PF06871 TraH_2

EC number: NA

Molecular weight: Translated: 20995; Mature: 20995

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDAALIKECADPSLKPAIVEQFVAAAGSTDPLAVSVESGGRLILVPKATSAGEAMAIVR
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHH
QYVGQAVVRVGLTQFPVGVGVKNAADLQPDLVDACENLRKGTSMFAKVLRIVAKSYGNPE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDDVIPQIFEDAVYAWKTGEFEGVSVFQAPDPGGSVATEEVLRSDDRDSHTQDSASEWPE
CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCC
GNDSVGSAAMRIDLSRIGGT
CCCCCCHHHHEEEHHHCCCC
>Mature Secondary Structure
MLDAALIKECADPSLKPAIVEQFVAAAGSTDPLAVSVESGGRLILVPKATSAGEAMAIVR
CCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHH
QYVGQAVVRVGLTQFPVGVGVKNAADLQPDLVDACENLRKGTSMFAKVLRIVAKSYGNPE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SDDVIPQIFEDAVYAWKTGEFEGVSVFQAPDPGGSVATEEVLRSDDRDSHTQDSASEWPE
CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHCCC
GNDSVGSAAMRIDLSRIGGT
CCCCCCHHHHEEEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424