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The map label for this gene is traB

Identifier: 16519706

GI number: 16519706

Start: 516892

End: 518055

Strand: Direct

Name: traB

Synonym: NGR_a04000

Alternate gene names: 16519706

Gene position: 516892-518055 (Clockwise)

Preceding gene: 16519707

Following gene: 16519705

Centisome position: 96.41

GC content: 62.37

Gene sequence:

>1164_bases
ATGCGCCGTGATCACCTCCAGCCGAGACTGCTGACCATCGCTTCAATTGTAGTCGGAACGGTCGGGTGGAGCGGTTATGC
CCTCCTTCTTCCGGTCGCACTGGCATTCCCAATTCTTTGGTCGCGCGCGCGCACGCGGAGGGTAGCGGCACTCGTTTCCG
CTGGATACTTCCTGGCGGCGTCACGCGGGCTGCCGCAAGGCGTCGCGGCGTTCTATACCTCCGATCTGTGGCCGGGCTTG
CTGCTGTGGCTGTGCGCCTCGGGGAGCTTTGTTGTCGTGCATACGGTGCTCTGGACGAAGCGTTCGGATTGTCGACCGTT
TCGCTATCTCCTGGCGGCTGTCCTTATGGCTGTGCCGCCAATGGGCATCACCGGCTGGGCGCATCCTGTCACGGCCGCGG
GAATTCTCTTTCCGGGATGGGGATGGTGGGGACTGGTCGCGACGACAGCCGGCCTCATGGGCCTCGTAACCCGCATGTGG
CCGGCTGTCGCAATCGCCTTCACAGGCTTTTGGCTTTGGTCCGCCGCAAACTGGACCGAGTCGAAATTACCTGCGAGCTG
GCAGGGCGTCGATCTCAAACTGGGGTCAACGCTCGGCCGGAACACCAGCATTCAGCGTCACCGTGATCTGATTGCCACGG
TGAAGGACCGCGCATCTGGTGGCGTCCGGAATGTAGTTCTGCCCGAAAGCGCCTTGGGCTTCTGGACACCGACCTTCGAA
CGGCTCTGGGTCAAGGCTCTGCAGGGCACGGAGATCTCCGTCATCTCCGGCGCGGCGGCGATCGACGCGACCGGATACGA
CAATGTGTTGGTCACCCTCTCGGCCGATGGCGGCAGGGTCCTCTATCGCGAGCGAATGCCGGTCCCGGGCTCCATGTGGC
AGCCATGGGGATCGTGGCTCGGTGAGAGCGACGGCGCCCGGGCGCACTTCTTTGCCAACCCTGTCGTGACCGTAGGCAAT
AGCCGGGTCGCTCCCCTGATTTGTTACGAGCAGCTCGTCGTCTGGCCCACTTTGCAATCGATGCTCTACGAGCCGGACCT
GATCGTCGCAGTCGGAAACGGATGGTGGACCAAAGGGACATCCATCGTCGCGATTCAGCGAGTCAACGCGATCGCTTGGG
CAAAGCTGTTCGCGAAACCGCTTGTTCTTTCCTTCAACACCTGA

Upstream 100 bases:

>100_bases
GTGTTCCTGCACTCGCCGTTCTCGGGCTCCTATGACTCCCGTTATTTCGGTCCGATCCCGGCCGCCGGCATTCTCGGCCT
GGCGCAAGAAGTCCTGACCT

Downstream 100 bases:

>100_bases
AGCCCGAGGAGACGTCATGCTCGACGCTGCCCTAATCAAAGAATGCGCCGATCCTTCTCTCAAGCCCGCGATCGTCGAGC
AGTTCGTCGCAGCCGCCGGC

Product: conjugal transfer protein TraB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MRRDHLQPRLLTIASIVVGTVGWSGYALLLPVALAFPILWSRARTRRVAALVSAGYFLAASRGLPQGVAAFYTSDLWPGL
LLWLCASGSFVVVHTVLWTKRSDCRPFRYLLAAVLMAVPPMGITGWAHPVTAAGILFPGWGWWGLVATTAGLMGLVTRMW
PAVAIAFTGFWLWSAANWTESKLPASWQGVDLKLGSTLGRNTSIQRHRDLIATVKDRASGGVRNVVLPESALGFWTPTFE
RLWVKALQGTEISVISGAAAIDATGYDNVLVTLSADGGRVLYRERMPVPGSMWQPWGSWLGESDGARAHFFANPVVTVGN
SRVAPLICYEQLVVWPTLQSMLYEPDLIVAVGNGWWTKGTSIVAIQRVNAIAWAKLFAKPLVLSFNT

Sequences:

>Translated_387_residues
MRRDHLQPRLLTIASIVVGTVGWSGYALLLPVALAFPILWSRARTRRVAALVSAGYFLAASRGLPQGVAAFYTSDLWPGL
LLWLCASGSFVVVHTVLWTKRSDCRPFRYLLAAVLMAVPPMGITGWAHPVTAAGILFPGWGWWGLVATTAGLMGLVTRMW
PAVAIAFTGFWLWSAANWTESKLPASWQGVDLKLGSTLGRNTSIQRHRDLIATVKDRASGGVRNVVLPESALGFWTPTFE
RLWVKALQGTEISVISGAAAIDATGYDNVLVTLSADGGRVLYRERMPVPGSMWQPWGSWLGESDGARAHFFANPVVTVGN
SRVAPLICYEQLVVWPTLQSMLYEPDLIVAVGNGWWTKGTSIVAIQRVNAIAWAKLFAKPLVLSFNT
>Mature_387_residues
MRRDHLQPRLLTIASIVVGTVGWSGYALLLPVALAFPILWSRARTRRVAALVSAGYFLAASRGLPQGVAAFYTSDLWPGL
LLWLCASGSFVVVHTVLWTKRSDCRPFRYLLAAVLMAVPPMGITGWAHPVTAAGILFPGWGWWGLVATTAGLMGLVTRMW
PAVAIAFTGFWLWSAANWTESKLPASWQGVDLKLGSTLGRNTSIQRHRDLIATVKDRASGGVRNVVLPESALGFWTPTFE
RLWVKALQGTEISVISGAAAIDATGYDNVLVTLSADGGRVLYRERMPVPGSMWQPWGSWLGESDGARAHFFANPVVTVGN
SRVAPLICYEQLVVWPTLQSMLYEPDLIVAVGNGWWTKGTSIVAIQRVNAIAWAKLFAKPLVLSFNT

Specific function: Enhances conjugal transfer of the plasmid (Potential)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid traB

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAB_RHISN (P55416)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443826.1
- ProteinModelPortal:   P55416
- GeneID:   962597
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04000
- HOGENOM:   HBG300445
- ProtClustDB:   PRK13825
- GO:   GO:0000746
- InterPro:   IPR016707
- InterPro:   IPR003010
- Gene3D:   G3DSA:3.60.110.10
- PIRSF:   PIRSF017932

Pfam domain/function: PF00795 CN_hydrolase; SSF56317 Ntlse/CNhydtse

EC number: NA

Molecular weight: Translated: 42200; Mature: 42200

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc44fcd8)-; HASH(0xc780618)-; HASH(0xc84b2d0)-; HASH(0xc4d8c0c)-; HASH(0xc77ee54)-; HASH(0xc82e2e0)-; HASH(0xc72f718)-; HASH(0xb897898)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRDHLQPRLLTIASIVVGTVGWSGYALLLPVALAFPILWSRARTRRVAALVSAGYFLAA
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEE
SRGLPQGVAAFYTSDLWPGLLLWLCASGSFVVVHTVLWTKRSDCRPFRYLLAAVLMAVPP
CCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEHHCCCCCCCHHHHHHHHHHHHCCC
MGITGWAHPVTAAGILFPGWGWWGLVATTAGLMGLVTRMWPAVAIAFTGFWLWSAANWTE
CCCCCCCCCHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SKLPASWQGVDLKLGSTLGRNTSIQRHRDLIATVKDRASGGVRNVVLPESALGFWTPTFE
CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHH
RLWVKALQGTEISVISGAAAIDATGYDNVLVTLSADGGRVLYRERMPVPGSMWQPWGSWL
HHHHHHHCCCEEEEEECCEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCHHHHC
GESDGARAHFFANPVVTVGNSRVAPLICYEQLVVWPTLQSMLYEPDLIVAVGNGWWTKGT
CCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCC
SIVAIQRVNAIAWAKLFAKPLVLSFNT
EEEEEEHHHHHHHHHHHHCCEEEEECH
>Mature Secondary Structure
MRRDHLQPRLLTIASIVVGTVGWSGYALLLPVALAFPILWSRARTRRVAALVSAGYFLAA
CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEE
SRGLPQGVAAFYTSDLWPGLLLWLCASGSFVVVHTVLWTKRSDCRPFRYLLAAVLMAVPP
CCCCCHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEHHCCCCCCCHHHHHHHHHHHHCCC
MGITGWAHPVTAAGILFPGWGWWGLVATTAGLMGLVTRMWPAVAIAFTGFWLWSAANWTE
CCCCCCCCCHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SKLPASWQGVDLKLGSTLGRNTSIQRHRDLIATVKDRASGGVRNVVLPESALGFWTPTFE
CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHH
RLWVKALQGTEISVISGAAAIDATGYDNVLVTLSADGGRVLYRERMPVPGSMWQPWGSWL
HHHHHHHCCCEEEEEECCEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCHHHHC
GESDGARAHFFANPVVTVGNSRVAPLICYEQLVVWPTLQSMLYEPDLIVAVGNGWWTKGT
CCCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCC
SIVAIQRVNAIAWAKLFAKPLVLSFNT
EEEEEEHHHHHHHHHHHHCCEEEEECH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424