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The map label for this gene is scpB

Identifier: 13508040

GI number: 13508040

Start: 355039

End: 355665

Strand: Direct

Name: scpB

Synonym: MPN301

Alternate gene names: 13508040

Gene position: 355039-355665 (Clockwise)

Preceding gene: 13508039

Following gene: 13508041

Centisome position: 43.49

GC content: 41.63

Gene sequence:

>627_bases
ATGGACGCGACAATTAAGGTAACTAAACCCGTTTTAAAACAAAAGGATAGCAGCGCTGCTAATTTAGTTGCTGCCATTTA
TGGGTTGTTGTTTGTAAGTGGCGAAAAGGGCTTAACGTTAGCGGAATTAAACCGCGTATTGCGCAAGGTGGGTTTGGAAA
AGATTAAGGCCGCTTTAGTGCAGTTAGAGCGCAAGTTAAGTTTAGATGATGAAAGCGGGATTGAAATTAAAAAGTTTGGT
CACAGCTTTCGCTTGGTCACCAAAATGGAGATCAAGGACTTTATCCACCGTTACCTACCCAACAAGATTAAAAATCCGCT
CAATTCCAAAACAATGGAAGTGTTAGCAATTATTGCTTACAACCAACCCTGCACCCGTCCGCGCATTAATGAAATTAGGG
GTGCAGATTCCTTTCAGATTGTCGATGACTTACTAGAAAAGGAGTTAATTGTTGAATTGGGCCGCAAAGACACACCTGGT
CGTCCCTTTATTTATGAAGTGTCGCCTAAGTTCTATGATCTGTTTGGGATTAACAGCTTGGATGAACTGCCTAAAGTCGA
GAATTTTGATCTCGACAAATTCCGCCAAGGTAGCTTTTTTGACTCTAACCGTTACGGGGATGATTAA

Upstream 100 bases:

>100_bases
AAGGATTACTTAACACGTGAACAGTTTTTAAAACTGTCTCCCGAAGAACGTGCTGCCCATGTGGCTAAAATGAAACAATT
AAAACTAGTAAAGAACGACA

Downstream 100 bases:

>100_bases
GGTTATATAATTAGCGCAAATGAGTCCAAAAACAACCAAAAAAATTGCCATTTTAACCTCTGGTGGTGATGCTCCAGGGA
TGAATGCCACACTAGTTTAC

Product: segregation and condensation protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MDATIKVTKPVLKQKDSSAANLVAAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFG
HSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDDLLEKELIVELGRKDTPG
RPFIYEVSPKFYDLFGINSLDELPKVENFDLDKFRQGSFFDSNRYGDD

Sequences:

>Translated_208_residues
MDATIKVTKPVLKQKDSSAANLVAAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFG
HSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDDLLEKELIVELGRKDTPG
RPFIYEVSPKFYDLFGINSLDELPKVENFDLDKFRQGSFFDSNRYGDD
>Mature_208_residues
MDATIKVTKPVLKQKDSSAANLVAAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALVQLERKLSLDDESGIEIKKFG
HSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAYNQPCTRPRINEIRGADSFQIVDDLLEKELIVELGRKDTPG
RPFIYEVSPKFYDLFGINSLDELPKVENFDLDKFRQGSFFDSNRYGDD

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_MYCPN (P75477)

Other databases:

- EMBL:   U00089
- PIR:   S73861
- RefSeq:   NP_109989.1
- ProteinModelPortal:   P75477
- SMR:   P75477
- GeneID:   877283
- GenomeReviews:   U00089_GR
- KEGG:   mpn:MPN301
- HOGENOM:   HBG752450
- OMA:   ITDNFFK
- ProtClustDB:   PRK00135
- BioCyc:   MPNE272634:MPN301-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 23682; Mature: 23682

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATIKVTKPVLKQKDSSAANLVAAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALV
CCCCEECHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLERKLSLDDESGIEIKKFGHSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAY
HHHHHCCCCCCCCCCHHHCCCHHEEHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHEEC
NQPCTRPRINEIRGADSFQIVDDLLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSL
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEHHCCCCCH
DELPKVENFDLDKFRQGSFFDSNRYGDD
HHCCCCCCCCHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDATIKVTKPVLKQKDSSAANLVAAIYGLLFVSGEKGLTLAELNRVLRKVGLEKIKAALV
CCCCEECHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLERKLSLDDESGIEIKKFGHSFRLVTKMEIKDFIHRYLPNKIKNPLNSKTMEVLAIIAY
HHHHHCCCCCCCCCCHHHCCCHHEEHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHEEC
NQPCTRPRINEIRGADSFQIVDDLLEKELIVELGRKDTPGRPFIYEVSPKFYDLFGINSL
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEHHCCCCCH
DELPKVENFDLDKFRQGSFFDSNRYGDD
HHCCCCCCCCHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633