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The map label for this gene is ydcM [C]

Identifier: 15669831

GI number: 15669831

Start: 1615927

End: 1617171

Strand: Direct

Name: ydcM [C]

Synonym: MJ1635

Alternate gene names: 15669831

Gene position: 1615927-1617171 (Clockwise)

Preceding gene: 15669828

Following gene: 15669832

Centisome position: 97.05

GC content: 30.68

Gene sequence:

>1245_bases
ATGTCAAATAAAACAAAATTAAAGGATAATAAAGAATTGCTCTACCAAGTCGTTCTATCCTACAAAGTTAGCCATAACTA
CCCACTTAAAGCTTTTTTAATTGAGTGTAAGAACAAATTAAACGAATGCATAGACATGATTTGGAATAATATCAAATACA
CTAAAAAAGATAATCCAAAATTACCAAAATCAAACGAATTTAAAAGAGAGTTAAGAAACAAACTCTTAGAGAACTGGAAT
TATGCTTCTCACTACATCGATGGGATTATAAAAACCTCCTATTCTATCCTGCAAAGTTGGGCGTCTAACTACAAAAGGGG
CTATAGAACTAAAACAAAACCGATAGCAAAAAGGCTATTCGTTAGAGTTAAGACAACCCTAATAAAATACGATAAAGAAA
AAGGAGAGATACGGATAACGATAAAACCAAGAAAGGACTACCTAATTCTAAATATTAAAAATGAGTGGTTTTTTGATAAG
GTTAAAAATTTAACCATTGGAGAAATTATTTTAAAAGAAAAGGAAACATTTTTAACTTTCAAAGATAACCTAAACTATTC
AGATAAAGGGATGATCGTTGGAGTGGATAGCAATCTAAGGTCTCTTGACTTATTTCATCCGATAGAAGGTTGGACTAGAG
TAGATTTAACTGAATTACATCGAATTAAGGAGGTTTATGATAGAAAAATTGATTTTCTTAAAAAATTACTTAAAAAGTTT
CCTTTGAGAGCTATGAGAAAGATAAATAGGTTGTTCGAAAGAAGAAGAAATAGGGTTAAGGATTTCTTACATAAACTAAC
TATTCAACTATCTCGATTATTTCCAGATGCAATTTTTGTTTTTGAGGATTTAAATAAAAGAAGAATGTATAAAAGCAAAT
ACTTCAATAGAAAAATAGATAGAGTAAATTGGAATGGCCTAATTGAAAAAATAAGTTATAAAACAATTGTTATTTTGGTT
AATCCTGCCTACACATCAACAATCTGTCCTATATGCGGGAGTAGAATGGAGTCCCAAGAAGGACAGGTTGTTTATTGCTC
TAATTGTTTAAACTCTTTTAATAGACAGTTAGTTGGTTGCTATAATATTTTTAAAAGAGGTTTAGGGAATATTAAAGAGA
TTATGGGTGGCTCGGGGGTTACCACGACAGGGGTAGAGGTTTCCTTTGGGAAACTGATGACACCCAATCCCAACGTGATT
TATATAGTAGATTATAACGGAAAATATTTTAATGAAATTGCCTAA

Upstream 100 bases:

>100_bases
CCTTCCAAAACTGTTTAATCTATAAACAAATGTAACATAGAGGAAAACTTTTTTGAGTATATAACAGTATAATATCATAC
AAAATACAATAACGATTAAT

Downstream 100 bases:

>100_bases
ATATCTATAATTGACCATGTTGGGAGAACCCCATATAAAGCTACATGTTCCATTGGTGATAAGATGCTGAGTGTAAATAA
AAAGGCATTAGAAATTGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MSNKTKLKDNKELLYQVVLSYKVSHNYPLKAFLIECKNKLNECIDMIWNNIKYTKKDNPKLPKSNEFKRELRNKLLENWN
YASHYIDGIIKTSYSILQSWASNYKRGYRTKTKPIAKRLFVRVKTTLIKYDKEKGEIRITIKPRKDYLILNIKNEWFFDK
VKNLTIGEIILKEKETFLTFKDNLNYSDKGMIVGVDSNLRSLDLFHPIEGWTRVDLTELHRIKEVYDRKIDFLKKLLKKF
PLRAMRKINRLFERRRNRVKDFLHKLTIQLSRLFPDAIFVFEDLNKRRMYKSKYFNRKIDRVNWNGLIEKISYKTIVILV
NPAYTSTICPICGSRMESQEGQVVYCSNCLNSFNRQLVGCYNIFKRGLGNIKEIMGGSGVTTTGVEVSFGKLMTPNPNVI
YIVDYNGKYFNEIA

Sequences:

>Translated_414_residues
MSNKTKLKDNKELLYQVVLSYKVSHNYPLKAFLIECKNKLNECIDMIWNNIKYTKKDNPKLPKSNEFKRELRNKLLENWN
YASHYIDGIIKTSYSILQSWASNYKRGYRTKTKPIAKRLFVRVKTTLIKYDKEKGEIRITIKPRKDYLILNIKNEWFFDK
VKNLTIGEIILKEKETFLTFKDNLNYSDKGMIVGVDSNLRSLDLFHPIEGWTRVDLTELHRIKEVYDRKIDFLKKLLKKF
PLRAMRKINRLFERRRNRVKDFLHKLTIQLSRLFPDAIFVFEDLNKRRMYKSKYFNRKIDRVNWNGLIEKISYKTIVILV
NPAYTSTICPICGSRMESQEGQVVYCSNCLNSFNRQLVGCYNIFKRGLGNIKEIMGGSGVTTTGVEVSFGKLMTPNPNVI
YIVDYNGKYFNEIA
>Mature_413_residues
SNKTKLKDNKELLYQVVLSYKVSHNYPLKAFLIECKNKLNECIDMIWNNIKYTKKDNPKLPKSNEFKRELRNKLLENWNY
ASHYIDGIIKTSYSILQSWASNYKRGYRTKTKPIAKRLFVRVKTTLIKYDKEKGEIRITIKPRKDYLILNIKNEWFFDKV
KNLTIGEIILKEKETFLTFKDNLNYSDKGMIVGVDSNLRSLDLFHPIEGWTRVDLTELHRIKEVYDRKIDFLKKLLKKFP
LRAMRKINRLFERRRNRVKDFLHKLTIQLSRLFPDAIFVFEDLNKRRMYKSKYFNRKIDRVNWNGLIEKISYKTIVILVN
PAYTSTICPICGSRMESQEGQVVYCSNCLNSFNRQLVGCYNIFKRGLGNIKEIMGGSGVTTTGVEVSFGKLMTPNPNVIY
IVDYNGKYFNEIA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1635_METJA (Q59029)

Other databases:

- EMBL:   L77117
- PIR:   A64504
- RefSeq:   NP_248645.1
- GeneID:   1452544
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1635
- NMPDR:   fig|243232.1.peg.1682
- TIGR:   MJ1635
- HOGENOM:   HBG706332
- OMA:   KIERKEV
- ProtClustDB:   CLSK696934
- BioCyc:   MJAN243232:MJ_1635-MONOMER
- GO:   GO:0032196
- InterPro:   IPR001959
- InterPro:   IPR010095
- TIGRFAMs:   TIGR01766

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35

EC number: NA

Molecular weight: Translated: 49004; Mature: 48873

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKTKLKDNKELLYQVVLSYKVSHNYPLKAFLIECKNKLNECIDMIWNNIKYTKKDNPK
CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
LPKSNEFKRELRNKLLENWNYASHYIDGIIKTSYSILQSWASNYKRGYRTKTKPIAKRLF
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VRVKTTLIKYDKEKGEIRITIKPRKDYLILNIKNEWFFDKVKNLTIGEIILKEKETFLTF
HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHCCCCHHHHHHHCCCEEEEE
KDNLNYSDKGMIVGVDSNLRSLDLFHPIEGWTRVDLTELHRIKEVYDRKIDFLKKLLKKF
ECCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
PLRAMRKINRLFERRRNRVKDFLHKLTIQLSRLFPDAIFVFEDLNKRRMYKSKYFNRKID
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
RVNWNGLIEKISYKTIVILVNPAYTSTICPICGSRMESQEGQVVYCSNCLNSFNRQLVGC
CCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHH
YNIFKRGLGNIKEIMGGSGVTTTGVEVSFGKLMTPNPNVIYIVDYNGKYFNEIA
HHHHHHCCCHHHHHHCCCCCEECCCEEECCCEECCCCCEEEEEECCCCHHHCCC
>Mature Secondary Structure 
SNKTKLKDNKELLYQVVLSYKVSHNYPLKAFLIECKNKLNECIDMIWNNIKYTKKDNPK
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
LPKSNEFKRELRNKLLENWNYASHYIDGIIKTSYSILQSWASNYKRGYRTKTKPIAKRLF
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VRVKTTLIKYDKEKGEIRITIKPRKDYLILNIKNEWFFDKVKNLTIGEIILKEKETFLTF
HHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHCCCCHHHHHHHCCCEEEEE
KDNLNYSDKGMIVGVDSNLRSLDLFHPIEGWTRVDLTELHRIKEVYDRKIDFLKKLLKKF
ECCCCCCCCCEEEEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
PLRAMRKINRLFERRRNRVKDFLHKLTIQLSRLFPDAIFVFEDLNKRRMYKSKYFNRKID
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCC
RVNWNGLIEKISYKTIVILVNPAYTSTICPICGSRMESQEGQVVYCSNCLNSFNRQLVGC
CCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHH
YNIFKRGLGNIKEIMGGSGVTTTGVEVSFGKLMTPNPNVIYIVDYNGKYFNEIA
HHHHHHCCCHHHHHHCCCCCEECCCEEECCCEECCCCCEEEEEECCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087