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The map label for this gene is ycfH [C]

Identifier: 15669778

GI number: 15669778

Start: 1556676

End: 1557425

Strand: Direct

Name: ycfH [C]

Synonym: MJ1582

Alternate gene names: 15669778

Gene position: 1556676-1557425 (Clockwise)

Preceding gene: 15669777

Following gene: 15669779

Centisome position: 93.5

GC content: 32.4

Gene sequence:

>750_bases
TTGAGAGATGTGAAATATGTTGATGCTCACTGCCATATAGAAGATAAAGCATTCAACAAAAACAGAGATGAGGTCATTGA
GAGGGCTAAGAAAGAAGACGTTATAATAGTAACAAGTGGAGCAAGCTTAGGAGGTTGTTTGAGAGCTTTAGAGCTTAGAA
AGAAATATAATATTTATCTAACCCTTGGCTATCATCCTTCGAGAGTTAAAGCAGATGATAAAGTTATAGAGAAGGTTTAT
AACCTAATTAAAAATAATGAGTATGAGATTTTGGCTATTGGAGAGATTGGAATGGACATCAAAGATGAAAACTATAAGAG
GCAAGAAGAAATATTTAAAAAATTTTTGTCCTTAGCTGAAGAGCTTAACAAACCAATAGTTGTTCATGCAAGAGGATTTG
AGAGAAAGATATTTGATATAGCCAAAGATAAAGTTGATATTATGTTCCATTGCTATAGTGGCGATGTAGAGTTAGCTAAG
GAGATTGGAAAAGAAGGGCATTTAATATCAATTTCAACATTGGTGTGCTTTTCAGAACATCATAAAAAACTTGTTGAAAG
CTTAGATTTAGAGTATTTAACTACTGAGACTGACAGCCCTTATCTATCTCCAATCAAAGGAACTAAAAATGAACCAAAGA
ATGTTAAATTGGTTATTGAGGAGATAGCAAAGATTAAAGAGATGGAAGTTGAAGAGGTAAAAGATGTCATTTACAAAAAC
ACATGTAAATTCTTTAAGAGGAGATTGTAA

Upstream 100 bases:

>100_bases
ATTTACCTCAAGCAAAGTATTTTAAGCAGAGTTTTTATGGAATTCCAGTGAGAATGGCCATTTTAAAGAAGCTAATTGAG
GATAATGAAGGTGAATAGTT

Downstream 100 bases:

>100_bases
TGTATTATTTAAAACCCATTGGAGTTGTAGAGCAAAATGAGAACTATACAGTCCTAAATATATTTGATGAGTTTGTAGAG
GGGTTAGATGGTTTAAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MRDVKYVDAHCHIEDKAFNKNRDEVIERAKKEDVIIVTSGASLGGCLRALELRKKYNIYLTLGYHPSRVKADDKVIEKVY
NLIKNNEYEILAIGEIGMDIKDENYKRQEEIFKKFLSLAEELNKPIVVHARGFERKIFDIAKDKVDIMFHCYSGDVELAK
EIGKEGHLISISTLVCFSEHHKKLVESLDLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKN
TCKFFKRRL

Sequences:

>Translated_249_residues
MRDVKYVDAHCHIEDKAFNKNRDEVIERAKKEDVIIVTSGASLGGCLRALELRKKYNIYLTLGYHPSRVKADDKVIEKVY
NLIKNNEYEILAIGEIGMDIKDENYKRQEEIFKKFLSLAEELNKPIVVHARGFERKIFDIAKDKVDIMFHCYSGDVELAK
EIGKEGHLISISTLVCFSEHHKKLVESLDLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKN
TCKFFKRRL
>Mature_249_residues
MRDVKYVDAHCHIEDKAFNKNRDEVIERAKKEDVIIVTSGASLGGCLRALELRKKYNIYLTLGYHPSRVKADDKVIEKVY
NLIKNNEYEILAIGEIGMDIKDENYKRQEEIFKKFLSLAEELNKPIVVHARGFERKIFDIAKDKVDIMFHCYSGDVELAK
EIGKEGHLISISTLVCFSEHHKKLVESLDLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKN
TCKFFKRRL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family

Homologues:

Organism=Homo sapiens, GI110349730, Length=262, Percent_Identity=31.2977099236641, Blast_Score=127, Evalue=8e-30,
Organism=Homo sapiens, GI110349734, Length=262, Percent_Identity=31.2977099236641, Blast_Score=123, Evalue=1e-28,
Organism=Homo sapiens, GI226061853, Length=269, Percent_Identity=30.4832713754647, Blast_Score=121, Evalue=6e-28,
Organism=Homo sapiens, GI226061614, Length=255, Percent_Identity=29.4117647058824, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI226061595, Length=226, Percent_Identity=28.7610619469027, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI14042943, Length=294, Percent_Identity=23.8095238095238, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI225903439, Length=247, Percent_Identity=23.4817813765182, Blast_Score=68, Evalue=9e-12,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=30.7086614173228, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=24.21875, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI48994985, Length=242, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=260, Percent_Identity=31.1538461538462, Blast_Score=118, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=230, Percent_Identity=27.8260869565217, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17543026, Length=298, Percent_Identity=23.8255033557047, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24648690, Length=233, Percent_Identity=27.4678111587983, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1582_METJA (Q58977)

Other databases:

- EMBL:   L77117
- PIR:   E64497
- RefSeq:   NP_248591.1
- ProteinModelPortal:   Q58977
- SMR:   Q58977
- GeneID:   1452491
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1582
- NMPDR:   fig|243232.1.peg.1628
- TIGR:   MJ1582
- HOGENOM:   HBG629833
- OMA:   DIKDENY
- ProtClustDB:   CLSK876632
- BioCyc:   MJAN243232:MJ_1582-MONOMER
- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991
- PANTHER:   PTHR10060
- PIRSF:   PIRSF005902
- TIGRFAMs:   TIGR00010

Pfam domain/function: PF01026 TatD_DNase

EC number: 3.1.21.-

Molecular weight: Translated: 28901; Mature: 28901

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01137 TATD_1; PS01090 TATD_2; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDVKYVDAHCHIEDKAFNKNRDEVIERAKKEDVIIVTSGASLGGCLRALELRKKYNIYL
CCCCEEEECEEEEEHHHCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHEEEEE
TLGYHPSRVKADDKVIEKVYNLIKNNEYEILAIGEIGMDIKDENYKRQEEIFKKFLSLAE
EECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
ELNKPIVVHARGFERKIFDIAKDKVDIMFHCYSGDVELAKEIGKEGHLISISTLVCFSEH
HCCCCEEEEECCCHHHHHHHHCCCEEEEEEEECCCHHHHHHCCCCCCEEEEHHHHHHHHH
HKKLVESLDLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKN
HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
TCKFFKRRL
HHHHHHHCC
>Mature Secondary Structure
MRDVKYVDAHCHIEDKAFNKNRDEVIERAKKEDVIIVTSGASLGGCLRALELRKKYNIYL
CCCCEEEECEEEEEHHHCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHEEEEE
TLGYHPSRVKADDKVIEKVYNLIKNNEYEILAIGEIGMDIKDENYKRQEEIFKKFLSLAE
EECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
ELNKPIVVHARGFERKIFDIAKDKVDIMFHCYSGDVELAKEIGKEGHLISISTLVCFSEH
HCCCCEEEEECCCHHHHHHHHCCCEEEEEEEECCCHHHHHHCCCCCCEEEEHHHHHHHHH
HKKLVESLDLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKN
HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
TCKFFKRRL
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087