Click here to switch to the map view.

The map label for this gene is rfcS

Identifier: 15669613

GI number: 15669613

Start: 1387626

End: 1393169

Strand: Reverse

Name: rfcS

Synonym: MJ1422

Alternate gene names: 15669613

Gene position: 1393169-1387626 (Counterclockwise)

Preceding gene: 15669614

Following gene: 15669612

Centisome position: 83.68

GC content: 30.88

Gene sequence:

>5544_bases
TTGGTGATAATAATGGAAAAACCATGGGTAGAGAAGTATAGACCAAAAACATTGGATGATATTGTTGGACAGGATGAAAT
AGTAAAGAGATTAAAGAAATATGTCGAAAAAAAGAGCATGCCGCATTTATTATTTAGCGGACCTCCAGGAGTTGGAAAGT
GCTTAACAGGAGATACAAAAGTTATTGTAAATGGAGAGATTAGAGAAATTGGAGAAGTTATTGAAGAGATAAGCAATGGA
AAATTTGGAGTAACTTTAACCAACAACTTAAAAGTTTTAGGAATTGATGAAGATGGAAAAATTAGAGAGTTTGATGTGCA
GTATGTCTATAAGGATAAAACCAACACGTTGATAAAAATAAAAACCAAAATGGGTAGGGAGCTAAAAGTAACAACTTACC
ATCCACTTTTAATAAACCACAAAAATGGAGAAATAAAATGGGAGAAAGCAGAGAATTTAAAGGTTGGAGATAAATTAGCA
ACACCAAGATACATTTTATTTAATGAAAGTGATTATAATGAGGAATTAGCAGAATGGCTTGGGTATTTCATAGGAGATGG
GCATGCAGACAAAGAATCAAATAAAATAACCTTCACAAACGGTGATGAAAAACTTAGAAAGAGGTTTGCAGAACTTACTG
AAAAGTTGTTTAAGGATGCAAAAATAAAAGAGAGAATACACAAAGACAGAACACCAGATATTTATGTTAATTCAAAAGAA
GCTGTTGAATTTATTGACAAGCTTGGTTTAAGAGGAAAGAAAGCAGATAAAGTTAGAATTCCAAAAGAAATAATGAGAAG
TGATGCATTAAGGGCATTTTTAAGAGCATACTTTGATTGTGATGGTGGTATTGAAAAACACTCAATAGTTTTATCAACTG
CAAGTAAAGAAATGGCAGAGGATTTAGTTTATGCCTTATTAAGGTTTGGAATAATTGCAAAATTGAGGGAAAAAGTAAAT
AAAAACAATAACAAAGTATATTACCATATTGTTATCTCAAACTCTTCAAACTTAAGGACATTCTTGGACAACATTGGATT
TAGTCAAGAAAGAAAACTTAAAAAGCTCTTAGAAATCATAAAAGATGAAAATCCAAACTTAGATGTTATAACTATCGACA
AAGAGAAAATAAGATACATAAGAGATAGATTAAAGGTTAAATTAACAAGAGACATTGAAAAAGATAATTGGAGTTACAAC
AAGTGCAGAAAAATCACTCAAGAACTTTTAAAAGAAATATACTACAGATTAGAAGAGTTAAAAGAAATTGAAAAAGCATT
AGAAGAAAATATATTAATCGATTGGGATGAAGTTGCAGAAAGAAGAAAAGAAATTGCAGAAAAAACTGGAATAAGAAGTG
ATAGGATTTTAGAATATATAAGAGGTAAAAGAAAACCAAGTTTAAAGAACTATATAAAAATTGCCAATACCCTTGGTAAA
AATATTGAAAAAATCATTGATGCAATGAGAATCTTTGCTAAAAAGTATTCAAGCTATGCAGAGATTGGAAAAATGCTCAA
TATGTGGAATTCAAGTATAAAAATTTACTTAGAGAGCAATACCCAAGAAATTGAAAAACTTGAAGAAATTAGAAAAACTG
AACTTAAACTTGTAAAAGAGATTCTTAACGATGAAAAATTGATAGATAGCATTGGCTATGTATTATTCTTAGCATCTAAC
GAAATTTATTGGGACGAAATTGTTGAAATTGAGCAATTAAATGGTGAATTCACAATCTATGACTTACACGTTCCAAGATA
CCACAACTTTATTGGTGGGAATTTACCAACTATACTGCACAATACAACCGCCGCTTTATGTTTAGCAAGAGATTTATTTG
GAGAAAACTGGAGAGATAACTTTTTAGAGTTAAATGCCTCTGTTTCAAAAGATACACCAATATTGGTTAAAATAGATGGA
AAGGTAAAGAGAACAACCTTTGAAGAACTTGATAAGATATACTTTGAAACTAACGATGAAAATGAGATGTATAAGAAAGT
TGATAACTTAGAGGTTTTAACTGTAGATGAAAACTTTAGAGTTAGATGGAGAAAGGTTTCTACAATAATTAGGCATAAAG
TTGATAAGATTTTGAGAATTAAGTTTGAAGGAGGATATATAGAGCTAACTGGAAACCACTCAATTATGATGCTTGATGAA
AATGGTTTAGTGGCAAAGAAAGCAAGTGATATAAAGGTTGGGGATTGTTTCTTAAGCTTTGTAGCCAATATTGAAGGTGA
AAAAGATAGGTTGGATTTAAAAGAGTTTGAACCAAAGGATATTACTTCAAGGGTTAAGATAATTAATGACTTTGACATTG
ATGAAGACACTGCATGGATGCTTGGATTGTATGTTGCTGAAGGAGCTGTAGGCTTTAAGGGGAAAACATCTGGACAAGTT
ATTTATACATTAGGTAGCCATGAGCATGATTTAATTAATAAATTAAATGATATTGTTGATAAAAAAGGATTTAGCAAATA
TGAAAACTTCACTGGCTCTGGATTTGATAGAAAAAGGTTATCTGCAAAGCAGATTAGAATATTAAATACCCAACTTGCGA
GATTTGTTGAGGAAAACTTCTATGATGGTAATGGAAGAAGAGCAAGAAATAAAAGAATTCCAGATATTATATTTGAATTA
AAAGAAAATCTAAGAGTTGAATTCTTAAAAGGATTGGCTGATGGAGATAGTAGTGGAAATTGGAGAGAAGTTGTTAGAAT
ATCATCCAAATCAGATAATTTATTAATCGATACGGTATGGCTTGCAAGAATATCTGGCATTGAAAGTTCAATATTTGAAA
ATGAAGCAAGATTGATTTGGAAAGGAGGAATGAAGTGGAAGAAAAGCAACTTACTACCGGCTGAGCCAATAATCAAAATG
ATTAAAAAGTTAGAGAATAAGATAAATGGAAACTGGAGATATATATTAAGACATCAACTCTATGAAGGTAAAAAGAGAGT
TTCAAAAGATAAAATTAAGCAAATTTTAGAAATGGTCAATGTTGAGAAATTATCAGATAAAGAAAAAGAAGTTTATGATT
TATTGAAAAAGTTATCTAAAACAGAGTTATATGCGTTGGTTGTTAAAGAGATTGAAATTATTGACTACAACGACTTTGTT
TATGATGTATCAGTTCCAAACAATGAGATGTTCTTTGCTGGAAATGTGCCAATATTATTGCATAATTCTGATGAAAGAGG
GATAGATGTAATTAGAACAAAAGTAAAAGATTTTGCAAGAACAAAGCCAATTGGGGATGTTCCATTTAAGATTATATTCT
TAGATGAGAGCGATGCATTAACTGCAGATGCACAGAACGCTTTAAGAAGAACAATGGAGAAATATTCAGATGTTTGTAGA
TTTATCTTGAGCTGTCTAACTGGAGATGCAAAAATAACTCTTCCAGATGAGAGAGAGATAAAGATAGAGGACTTTATAAA
AATGTTTGAAGAAAGAAAGCTTAAACATGTTTTAAATAGAAATGGAGAGGATTTAGTTTTAGCAGGGGTTAAATTTAACT
CAAAGATAGTTAATCATAAGGTTTATAGATTAGTTTTAGAAAGTGGTAGGGAGATAGAGGCAACAGGAGACCACAAGTTT
TTAACAAGAGATGGATGGAAGGAAGTTTATGAGCTAAAAGAGGATGATGAAGTATTGGTTTATCCAGCATTGGAAGGAGT
TGGGTTTGAAGTTGATGAAAGAAGGATAATTGGCTTAAATGAGTTCTACGAATTTTTAACAAACTATGAGATTAAACTTG
GATATAAACCATTAGGTAAAGCAAAAAGCTATAAGGAATTAATAACAAGAGATAAGGAGAAAATATTAAGTAGAGTTTTG
GAGCTCTCAGATAAATACAGTAAATCAGAGATTAGAAGAAAGATTGAGGAAGAATTTGGAATAAAAATATCACTAACAAC
TATAAAAAATCTTATAAATGGAAAAATTGATGGATTTGCTTTAAAATACGTTAGGAAAATTAAGGAACTTGGATGGGATG
AGATAACTTATGATGATGAAAAAGCAGGAATCTTTGCAAGGTTGCTGGGCTTTATAATTGGAGACGGGCATTTATCAAAA
TCAAAAGAAGGAAGAATATTGATAACTGCTACAATAAATGAACTTGAAGGAATTAAGAAAGATTTAGAAAAATTAGGCAT
AAAAGCATCAAACATAATTGAAAAAGATATTGAACATAAATTGGATGGTAGAGAAATTAAAGGCAAAACATCATTTATAT
ATATAAATAACAAGGCATTTTATTTATTGCTAAACTTCTGGGGAGTTGAAATTGGAAATAAAACCATAAACGGATATAAC
ATTCCAAAATGGATAAAATACGGAAATAAATTTGTCAAGAGAGAGTTTTTGAGAGGTTTATTTGGAGCTGATGGAACTAA
ACCGTATATCAAAAAATACAACATAAATGGAATTAAATTAGGGATAAGAGTCGAAAACATAAGTAAAGATAAGACATTAG
AGTTCTTTGAGGAAGTTAAAAAGATGTTAGAAGAGTTTGAAGTTGAATCATATATTAAAGTCAGTAAAATTGATAACAAA
AACTTAACTGAGTTGATAGTGAAAGCAAATAATAAAAACTATCTAAAATATCTATCAAGAATATCCTATGCCTATGAAAA
AGACAACTTTGCAAGGTTAGTTGGAGAGTATCTAAGAATCAAGGAGGCATATAAGGATATAATCCTAAAAGAGATTGCTG
AAAATGCATTGAAAGAAGCAGATGGTGAAAAATCTCTAAGAGAATTGGCAAGGAAATATAATGTTCCAGTTGATTTTATA
ATAAATCAACTTAAAGGAAAAGACATTGGATTACCAAGAAACTTTATGACCTTTGAAGAGTTCTTAAAAGAAAAGGTTGT
TGATGGAAAGTATGTTTCAGAAAGAATCATTAAGAAAGAGTGTATTGGTTATAGAGATGTCTATGATATAACCTGCCATA
AAGACCCTTCATTTATAGCAAATGGATTTGTGTCTCATAACTGCAACTATCCAAGCAAGATCATTCCTCCAATTCAATCA
AGATGTGCTGTCTTTAGGTTTTCTCCATTAAAGAAAGAGGATATTGCCAAAAAATTAAAAGAGATTGCTGAGAAAGAAGG
TTTGAATTTAACTGAAAGTGGTTTAGAGGCAATAATTTATGTCTCTGAGGGAGATATGAGAAAGGCAATAAATGTTTTAC
AGACAGCGGCAGCTTTGAGTGATGTTATAGATGATGAGATTGTTTATAAGGTCTCATCAAGAGCAAGACCTGAGGAAGTT
AAGAAGATGATGGAATTGGCTTTAGATGGAAAGTTCATGGAGGCAAGAGATTTATTGTATAAGCTTATGGTTGAGTGGGG
AATGAGTGGGGAGGATATATTAAACCAGATGTTTAGAGAGATAAACAGTTTGGATATTGATGAGAGGAAGAAGGTTGAGT
TGGCAGATGCTATTGGTGAAACTGACTTTAGAATAGTTGAGGGAGCTAATGAACGAATTCAATTGAGTGCTTTATTAGCA
AAAATGGCGTTAATGGGAAGATAA

Upstream 100 bases:

>100_bases
GAAGGTTTTAGGGAAAAGAGATATTGTAAAATCAAGATTTGGAGAAATATTGGATTATGCATTGGAATAAAGTTTAAAAA
TTATTAATCCATAAAAAATT

Downstream 100 bases:

>100_bases
TTTAACCTTCTTTTTCATGAATAATTTTATTATTTCCATAAAGATAGACGTTGAAAATGCCCTCACCAAACAAATAATCC
ATTCTTTTAAATTTAAAGAG

Product: replication factor C small subunit

Products: NA

Alternate protein names: RFC small subunit; Clamp loader small subunit

Number of amino acids: Translated: 1847; Mature: 1847

Protein sequence:

>1847_residues
MVIIMEKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLTGDTKVIVNGEIREIGEVIEEISNG
KFGVTLTNNLKVLGIDEDGKIREFDVQYVYKDKTNTLIKIKTKMGRELKVTTYHPLLINHKNGEIKWEKAENLKVGDKLA
TPRYILFNESDYNEELAEWLGYFIGDGHADKESNKITFTNGDEKLRKRFAELTEKLFKDAKIKERIHKDRTPDIYVNSKE
AVEFIDKLGLRGKKADKVRIPKEIMRSDALRAFLRAYFDCDGGIEKHSIVLSTASKEMAEDLVYALLRFGIIAKLREKVN
KNNNKVYYHIVISNSSNLRTFLDNIGFSQERKLKKLLEIIKDENPNLDVITIDKEKIRYIRDRLKVKLTRDIEKDNWSYN
KCRKITQELLKEIYYRLEELKEIEKALEENILIDWDEVAERRKEIAEKTGIRSDRILEYIRGKRKPSLKNYIKIANTLGK
NIEKIIDAMRIFAKKYSSYAEIGKMLNMWNSSIKIYLESNTQEIEKLEEIRKTELKLVKEILNDEKLIDSIGYVLFLASN
EIYWDEIVEIEQLNGEFTIYDLHVPRYHNFIGGNLPTILHNTTAALCLARDLFGENWRDNFLELNASVSKDTPILVKIDG
KVKRTTFEELDKIYFETNDENEMYKKVDNLEVLTVDENFRVRWRKVSTIIRHKVDKILRIKFEGGYIELTGNHSIMMLDE
NGLVAKKASDIKVGDCFLSFVANIEGEKDRLDLKEFEPKDITSRVKIINDFDIDEDTAWMLGLYVAEGAVGFKGKTSGQV
IYTLGSHEHDLINKLNDIVDKKGFSKYENFTGSGFDRKRLSAKQIRILNTQLARFVEENFYDGNGRRARNKRIPDIIFEL
KENLRVEFLKGLADGDSSGNWREVVRISSKSDNLLIDTVWLARISGIESSIFENEARLIWKGGMKWKKSNLLPAEPIIKM
IKKLENKINGNWRYILRHQLYEGKKRVSKDKIKQILEMVNVEKLSDKEKEVYDLLKKLSKTELYALVVKEIEIIDYNDFV
YDVSVPNNEMFFAGNVPILLHNSDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCR
FILSCLTGDAKITLPDEREIKIEDFIKMFEERKLKHVLNRNGEDLVLAGVKFNSKIVNHKVYRLVLESGREIEATGDHKF
LTRDGWKEVYELKEDDEVLVYPALEGVGFEVDERRIIGLNEFYEFLTNYEIKLGYKPLGKAKSYKELITRDKEKILSRVL
ELSDKYSKSEIRRKIEEEFGIKISLTTIKNLINGKIDGFALKYVRKIKELGWDEITYDDEKAGIFARLLGFIIGDGHLSK
SKEGRILITATINELEGIKKDLEKLGIKASNIIEKDIEHKLDGREIKGKTSFIYINNKAFYLLLNFWGVEIGNKTINGYN
IPKWIKYGNKFVKREFLRGLFGADGTKPYIKKYNINGIKLGIRVENISKDKTLEFFEEVKKMLEEFEVESYIKVSKIDNK
NLTELIVKANNKNYLKYLSRISYAYEKDNFARLVGEYLRIKEAYKDIILKEIAENALKEADGEKSLRELARKYNVPVDFI
INQLKGKDIGLPRNFMTFEEFLKEKVVDGKYVSERIIKKECIGYRDVYDITCHKDPSFIANGFVSHNCNYPSKIIPPIQS
RCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALSDVIDDEIVYKVSSRARPEEV
KKMMELALDGKFMEARDLLYKLMVEWGMSGEDILNQMFREINSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLA
KMALMGR

Sequences:

>Translated_1847_residues
MVIIMEKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLTGDTKVIVNGEIREIGEVIEEISNG
KFGVTLTNNLKVLGIDEDGKIREFDVQYVYKDKTNTLIKIKTKMGRELKVTTYHPLLINHKNGEIKWEKAENLKVGDKLA
TPRYILFNESDYNEELAEWLGYFIGDGHADKESNKITFTNGDEKLRKRFAELTEKLFKDAKIKERIHKDRTPDIYVNSKE
AVEFIDKLGLRGKKADKVRIPKEIMRSDALRAFLRAYFDCDGGIEKHSIVLSTASKEMAEDLVYALLRFGIIAKLREKVN
KNNNKVYYHIVISNSSNLRTFLDNIGFSQERKLKKLLEIIKDENPNLDVITIDKEKIRYIRDRLKVKLTRDIEKDNWSYN
KCRKITQELLKEIYYRLEELKEIEKALEENILIDWDEVAERRKEIAEKTGIRSDRILEYIRGKRKPSLKNYIKIANTLGK
NIEKIIDAMRIFAKKYSSYAEIGKMLNMWNSSIKIYLESNTQEIEKLEEIRKTELKLVKEILNDEKLIDSIGYVLFLASN
EIYWDEIVEIEQLNGEFTIYDLHVPRYHNFIGGNLPTILHNTTAALCLARDLFGENWRDNFLELNASVSKDTPILVKIDG
KVKRTTFEELDKIYFETNDENEMYKKVDNLEVLTVDENFRVRWRKVSTIIRHKVDKILRIKFEGGYIELTGNHSIMMLDE
NGLVAKKASDIKVGDCFLSFVANIEGEKDRLDLKEFEPKDITSRVKIINDFDIDEDTAWMLGLYVAEGAVGFKGKTSGQV
IYTLGSHEHDLINKLNDIVDKKGFSKYENFTGSGFDRKRLSAKQIRILNTQLARFVEENFYDGNGRRARNKRIPDIIFEL
KENLRVEFLKGLADGDSSGNWREVVRISSKSDNLLIDTVWLARISGIESSIFENEARLIWKGGMKWKKSNLLPAEPIIKM
IKKLENKINGNWRYILRHQLYEGKKRVSKDKIKQILEMVNVEKLSDKEKEVYDLLKKLSKTELYALVVKEIEIIDYNDFV
YDVSVPNNEMFFAGNVPILLHNSDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCR
FILSCLTGDAKITLPDEREIKIEDFIKMFEERKLKHVLNRNGEDLVLAGVKFNSKIVNHKVYRLVLESGREIEATGDHKF
LTRDGWKEVYELKEDDEVLVYPALEGVGFEVDERRIIGLNEFYEFLTNYEIKLGYKPLGKAKSYKELITRDKEKILSRVL
ELSDKYSKSEIRRKIEEEFGIKISLTTIKNLINGKIDGFALKYVRKIKELGWDEITYDDEKAGIFARLLGFIIGDGHLSK
SKEGRILITATINELEGIKKDLEKLGIKASNIIEKDIEHKLDGREIKGKTSFIYINNKAFYLLLNFWGVEIGNKTINGYN
IPKWIKYGNKFVKREFLRGLFGADGTKPYIKKYNINGIKLGIRVENISKDKTLEFFEEVKKMLEEFEVESYIKVSKIDNK
NLTELIVKANNKNYLKYLSRISYAYEKDNFARLVGEYLRIKEAYKDIILKEIAENALKEADGEKSLRELARKYNVPVDFI
INQLKGKDIGLPRNFMTFEEFLKEKVVDGKYVSERIIKKECIGYRDVYDITCHKDPSFIANGFVSHNCNYPSKIIPPIQS
RCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALSDVIDDEIVYKVSSRARPEEV
KKMMELALDGKFMEARDLLYKLMVEWGMSGEDILNQMFREINSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLA
KMALMGR
>Mature_1847_residues
MVIIMEKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLTGDTKVIVNGEIREIGEVIEEISNG
KFGVTLTNNLKVLGIDEDGKIREFDVQYVYKDKTNTLIKIKTKMGRELKVTTYHPLLINHKNGEIKWEKAENLKVGDKLA
TPRYILFNESDYNEELAEWLGYFIGDGHADKESNKITFTNGDEKLRKRFAELTEKLFKDAKIKERIHKDRTPDIYVNSKE
AVEFIDKLGLRGKKADKVRIPKEIMRSDALRAFLRAYFDCDGGIEKHSIVLSTASKEMAEDLVYALLRFGIIAKLREKVN
KNNNKVYYHIVISNSSNLRTFLDNIGFSQERKLKKLLEIIKDENPNLDVITIDKEKIRYIRDRLKVKLTRDIEKDNWSYN
KCRKITQELLKEIYYRLEELKEIEKALEENILIDWDEVAERRKEIAEKTGIRSDRILEYIRGKRKPSLKNYIKIANTLGK
NIEKIIDAMRIFAKKYSSYAEIGKMLNMWNSSIKIYLESNTQEIEKLEEIRKTELKLVKEILNDEKLIDSIGYVLFLASN
EIYWDEIVEIEQLNGEFTIYDLHVPRYHNFIGGNLPTILHNTTAALCLARDLFGENWRDNFLELNASVSKDTPILVKIDG
KVKRTTFEELDKIYFETNDENEMYKKVDNLEVLTVDENFRVRWRKVSTIIRHKVDKILRIKFEGGYIELTGNHSIMMLDE
NGLVAKKASDIKVGDCFLSFVANIEGEKDRLDLKEFEPKDITSRVKIINDFDIDEDTAWMLGLYVAEGAVGFKGKTSGQV
IYTLGSHEHDLINKLNDIVDKKGFSKYENFTGSGFDRKRLSAKQIRILNTQLARFVEENFYDGNGRRARNKRIPDIIFEL
KENLRVEFLKGLADGDSSGNWREVVRISSKSDNLLIDTVWLARISGIESSIFENEARLIWKGGMKWKKSNLLPAEPIIKM
IKKLENKINGNWRYILRHQLYEGKKRVSKDKIKQILEMVNVEKLSDKEKEVYDLLKKLSKTELYALVVKEIEIIDYNDFV
YDVSVPNNEMFFAGNVPILLHNSDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCR
FILSCLTGDAKITLPDEREIKIEDFIKMFEERKLKHVLNRNGEDLVLAGVKFNSKIVNHKVYRLVLESGREIEATGDHKF
LTRDGWKEVYELKEDDEVLVYPALEGVGFEVDERRIIGLNEFYEFLTNYEIKLGYKPLGKAKSYKELITRDKEKILSRVL
ELSDKYSKSEIRRKIEEEFGIKISLTTIKNLINGKIDGFALKYVRKIKELGWDEITYDDEKAGIFARLLGFIIGDGHLSK
SKEGRILITATINELEGIKKDLEKLGIKASNIIEKDIEHKLDGREIKGKTSFIYINNKAFYLLLNFWGVEIGNKTINGYN
IPKWIKYGNKFVKREFLRGLFGADGTKPYIKKYNINGIKLGIRVENISKDKTLEFFEEVKKMLEEFEVESYIKVSKIDNK
NLTELIVKANNKNYLKYLSRISYAYEKDNFARLVGEYLRIKEAYKDIILKEIAENALKEADGEKSLRELARKYNVPVDFI
INQLKGKDIGLPRNFMTFEEFLKEKVVDGKYVSERIIKKECIGYRDVYDITCHKDPSFIANGFVSHNCNYPSKIIPPIQS
RCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALSDVIDDEIVYKVSSRARPEEV
KKMMELALDGKFMEARDLLYKLMVEWGMSGEDILNQMFREINSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLA
KMALMGR

Specific function: Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 DOD-type homing endonuclease domains

Homologues:

Organism=Homo sapiens, GI28882049, Length=175, Percent_Identity=39.4285714285714, Blast_Score=127, Evalue=8e-29,
Organism=Homo sapiens, GI31563534, Length=175, Percent_Identity=39.4285714285714, Blast_Score=126, Evalue=2e-28,
Organism=Homo sapiens, GI6677723, Length=173, Percent_Identity=32.3699421965318, Blast_Score=117, Evalue=1e-25,
Organism=Homo sapiens, GI194306571, Length=173, Percent_Identity=32.3699421965318, Blast_Score=117, Evalue=1e-25,
Organism=Homo sapiens, GI194306567, Length=173, Percent_Identity=32.3699421965318, Blast_Score=117, Evalue=1e-25,
Organism=Homo sapiens, GI194306569, Length=173, Percent_Identity=32.3699421965318, Blast_Score=116, Evalue=2e-25,
Organism=Homo sapiens, GI4506491, Length=175, Percent_Identity=29.7142857142857, Blast_Score=97, Evalue=2e-19,
Organism=Homo sapiens, GI31881687, Length=175, Percent_Identity=29.7142857142857, Blast_Score=97, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17541988, Length=179, Percent_Identity=34.6368715083799, Blast_Score=118, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71986063, Length=168, Percent_Identity=31.547619047619, Blast_Score=104, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17554730, Length=78, Percent_Identity=41.025641025641, Blast_Score=70, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324478, Length=176, Percent_Identity=38.6363636363636, Blast_Score=117, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6324039, Length=180, Percent_Identity=28.8888888888889, Blast_Score=94, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6322528, Length=76, Percent_Identity=56.578947368421, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI17647857, Length=179, Percent_Identity=40.2234636871508, Blast_Score=129, Evalue=2e-29,
Organism=Drosophila melanogaster, GI19921076, Length=174, Percent_Identity=30.4597701149425, Blast_Score=100, Evalue=8e-21,
Organism=Drosophila melanogaster, GI18859927, Length=179, Percent_Identity=28.4916201117318, Blast_Score=84, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RFCS_METJA (Q58817)

Other databases:

- EMBL:   L77117
- PIR:   E64477
- RefSeq:   NP_248426.1
- ProteinModelPortal:   Q58817
- GeneID:   1452326
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_1422
- NMPDR:   fig|243232.1.peg.1463
- TIGR:   MJ1422
- HOGENOM:   HBG541019
- OMA:   YDDEKAG
- ProtClustDB:   PRK04132
- BioCyc:   MJAN243232:MJ_1422-MONOMER
- HAMAP:   MF_01509
- InterPro:   IPR008824
- InterPro:   IPR008921
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR001387
- InterPro:   IPR006142
- InterPro:   IPR004042
- InterPro:   IPR006141
- InterPro:   IPR010982
- InterPro:   IPR013748
- PRINTS:   PR00379
- SMART:   SM00305
- SMART:   SM00306
- SMART:   SM00530
- TIGRFAMs:   TIGR01443
- TIGRFAMs:   TIGR01445

Pfam domain/function: PF01381 HTH_3; PF08542 Rep_fac_C; PF05496 RuvB_N; SSF47413 Lambda_like_DNA; SSF48019 Pol_clamp_load_C

EC number: NA

Molecular weight: Translated: 214100; Mature: 214100

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50818 INTEIN_C_TER; PS50819 INTEIN_ENDONUCLEASE; PS50817 INTEIN_N_TER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIIMEKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLTGDTK
CEEEECCCCHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEE
VIVNGEIREIGEVIEEISNGKFGVTLTNNLKVLGIDEDGKIREFDVQYVYKDKTNTLIKI
EEECCCHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCCEEEE
KTKMGRELKVTTYHPLLINHKNGEIKWEKAENLKVGDKLATPRYILFNESDYNEELAEWL
EECCCCEEEEEEECCEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
GYFIGDGHADKESNKITFTNGDEKLRKRFAELTEKLFKDAKIKERIHKDRTPDIYVNSKE
HHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHH
AVEFIDKLGLRGKKADKVRIPKEIMRSDALRAFLRAYFDCDGGIEKHSIVLSTASKEMAE
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
DLVYALLRFGIIAKLREKVNKNNNKVYYHIVISNSSNLRTFLDNIGFSQERKLKKLLEII
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHH
KDENPNLDVITIDKEKIRYIRDRLKVKLTRDIEKDNWSYNKCRKITQELLKEIYYRLEEL
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KEIEKALEENILIDWDEVAERRKEIAEKTGIRSDRILEYIRGKRKPSLKNYIKIANTLGK
HHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
NIEKIIDAMRIFAKKYSSYAEIGKMLNMWNSSIKIYLESNTQEIEKLEEIRKTELKLVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
ILNDEKLIDSIGYVLFLASNEIYWDEIVEIEQLNGEFTIYDLHVPRYHNFIGGNLPTILH
HHCHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCHHHHCCCCCCCHHHH
NTTAALCLARDLFGENWRDNFLELNASVSKDTPILVKIDGKVKRTTFEELDKIYFETNDE
HHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
NEMYKKVDNLEVLTVDENFRVRWRKVSTIIRHKVDKILRIKFEGGYIELTGNHSIMMLDE
HHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCEEEEEECC
NGLVAKKASDIKVGDCFLSFVANIEGEKDRLDLKEFEPKDITSRVKIINDFDIDEDTAWM
CCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHEEEECCCCCCCHHHH
LGLYVAEGAVGFKGKTSGQVIYTLGSHEHDLINKLNDIVDKKGFSKYENFTGSGFDRKRL
HHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHC
SAKQIRILNTQLARFVEENFYDGNGRRARNKRIPDIIFELKENLRVEFLKGLADGDSSGN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
WREVVRISSKSDNLLIDTVWLARISGIESSIFENEARLIWKGGMKWKKSNLLPAEPIIKM
HHHHEEEECCCCCEEEEHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHH
IKKLENKINGNWRYILRHQLYEGKKRVSKDKIKQILEMVNVEKLSDKEKEVYDLLKKLSK
HHHHHHHHCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TELYALVVKEIEIIDYNDFVYDVSVPNNEMFFAGNVPILLHNSDERGIDVIRTKVKDFAR
HHHHHHHHHHHEEEECCCEEEEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHH
TKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFILSCLTGDAKITLPDEREI
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
KIEDFIKMFEERKLKHVLNRNGEDLVLAGVKFNSKIVNHKVYRLVLESGREIEATGDHKF
CHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCE
LTRDGWKEVYELKEDDEVLVYPALEGVGFEVDERRIIGLNEFYEFLTNYEIKLGYKPLGK
ECCCCHHHHHHCCCCCCEEEEECCCCCCCEECCCEEECHHHHHHHHCCCEEEECCCCCCC
AKSYKELITRDKEKILSRVLELSDKYSKSEIRRKIEEEFGIKISLTTIKNLINGKIDGFA
CHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEHHHHHHHHCCCCCHHH
LKYVRKIKELGWDEITYDDEKAGIFARLLGFIIGDGHLSKSKEGRILITATINELEGIKK
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHH
DLEKLGIKASNIIEKDIEHKLDGREIKGKTSFIYINNKAFYLLLNFWGVEIGNKTINGYN
HHHHHCCCHHHHHHHHHHHCCCCCEECCCEEEEEECCCEEEEEEEECCEEECCEEECCCC
IPKWIKYGNKFVKREFLRGLFGADGTKPYIKKYNINGIKLGIRVENISKDKTLEFFEEVK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEEEECCCCCHHHHHHHHHH
KMLEEFEVESYIKVSKIDNKNLTELIVKANNKNYLKYLSRISYAYEKDNFARLVGEYLRI
HHHHHHHHHHHEEEECCCCCCCEEHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KEAYKDIILKEIAENALKEADGEKSLRELARKYNVPVDFIINQLKGKDIGLPRNFMTFEE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHH
FLKEKVVDGKYVSERIIKKECIGYRDVYDITCHKDPSFIANGFVSHNCNYPSKIIPPIQS
HHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHH
RCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALS
HCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
DVIDDEIVYKVSSRARPEEVKKMMELALDGKFMEARDLLYKLMVEWGMSGEDILNQMFRE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
INSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALMGR
HCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVIIMEKPWVEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLTGDTK
CEEEECCCCHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEE
VIVNGEIREIGEVIEEISNGKFGVTLTNNLKVLGIDEDGKIREFDVQYVYKDKTNTLIKI
EEECCCHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCCEEEE
KTKMGRELKVTTYHPLLINHKNGEIKWEKAENLKVGDKLATPRYILFNESDYNEELAEWL
EECCCCEEEEEEECCEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHH
GYFIGDGHADKESNKITFTNGDEKLRKRFAELTEKLFKDAKIKERIHKDRTPDIYVNSKE
HHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHH
AVEFIDKLGLRGKKADKVRIPKEIMRSDALRAFLRAYFDCDGGIEKHSIVLSTASKEMAE
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHH
DLVYALLRFGIIAKLREKVNKNNNKVYYHIVISNSSNLRTFLDNIGFSQERKLKKLLEII
HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHH
KDENPNLDVITIDKEKIRYIRDRLKVKLTRDIEKDNWSYNKCRKITQELLKEIYYRLEEL
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KEIEKALEENILIDWDEVAERRKEIAEKTGIRSDRILEYIRGKRKPSLKNYIKIANTLGK
HHHHHHHHCCCEECHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
NIEKIIDAMRIFAKKYSSYAEIGKMLNMWNSSIKIYLESNTQEIEKLEEIRKTELKLVKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHH
ILNDEKLIDSIGYVLFLASNEIYWDEIVEIEQLNGEFTIYDLHVPRYHNFIGGNLPTILH
HHCHHHHHHHHCEEEEEECCCCCHHHHHHHHHCCCEEEEEEEECCHHHHCCCCCCCHHHH
NTTAALCLARDLFGENWRDNFLELNASVSKDTPILVKIDGKVKRTTFEELDKIYFETNDE
HHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCC
NEMYKKVDNLEVLTVDENFRVRWRKVSTIIRHKVDKILRIKFEGGYIELTGNHSIMMLDE
HHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCEEEEECCEEEEEECC
NGLVAKKASDIKVGDCFLSFVANIEGEKDRLDLKEFEPKDITSRVKIINDFDIDEDTAWM
CCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHEEEECCCCCCCHHHH
LGLYVAEGAVGFKGKTSGQVIYTLGSHEHDLINKLNDIVDKKGFSKYENFTGSGFDRKRL
HHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHC
SAKQIRILNTQLARFVEENFYDGNGRRARNKRIPDIIFELKENLRVEFLKGLADGDSSGN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
WREVVRISSKSDNLLIDTVWLARISGIESSIFENEARLIWKGGMKWKKSNLLPAEPIIKM
HHHHEEEECCCCCEEEEHHHHHHHHCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHH
IKKLENKINGNWRYILRHQLYEGKKRVSKDKIKQILEMVNVEKLSDKEKEVYDLLKKLSK
HHHHHHHHCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TELYALVVKEIEIIDYNDFVYDVSVPNNEMFFAGNVPILLHNSDERGIDVIRTKVKDFAR
HHHHHHHHHHHEEEECCCEEEEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHH
TKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVCRFILSCLTGDAKITLPDEREI
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC
KIEDFIKMFEERKLKHVLNRNGEDLVLAGVKFNSKIVNHKVYRLVLESGREIEATGDHKF
CHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCE
LTRDGWKEVYELKEDDEVLVYPALEGVGFEVDERRIIGLNEFYEFLTNYEIKLGYKPLGK
ECCCCHHHHHHCCCCCCEEEEECCCCCCCEECCCEEECHHHHHHHHCCCEEEECCCCCCC
AKSYKELITRDKEKILSRVLELSDKYSKSEIRRKIEEEFGIKISLTTIKNLINGKIDGFA
CHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEHHHHHHHHCCCCCHHH
LKYVRKIKELGWDEITYDDEKAGIFARLLGFIIGDGHLSKSKEGRILITATINELEGIKK
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHH
DLEKLGIKASNIIEKDIEHKLDGREIKGKTSFIYINNKAFYLLLNFWGVEIGNKTINGYN
HHHHHCCCHHHHHHHHHHHCCCCCEECCCEEEEEECCCEEEEEEEECCEEECCEEECCCC
IPKWIKYGNKFVKREFLRGLFGADGTKPYIKKYNINGIKLGIRVENISKDKTLEFFEEVK
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEEEECCCCCHHHHHHHHHH
KMLEEFEVESYIKVSKIDNKNLTELIVKANNKNYLKYLSRISYAYEKDNFARLVGEYLRI
HHHHHHHHHHHEEEECCCCCCCEEHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KEAYKDIILKEIAENALKEADGEKSLRELARKYNVPVDFIINQLKGKDIGLPRNFMTFEE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHH
FLKEKVVDGKYVSERIIKKECIGYRDVYDITCHKDPSFIANGFVSHNCNYPSKIIPPIQS
HHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCHHH
RCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMRKAINVLQTAAALS
HCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
DVIDDEIVYKVSSRARPEEVKKMMELALDGKFMEARDLLYKLMVEWGMSGEDILNQMFRE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
INSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMALMGR
HCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087