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The map label for this gene is 15668964

Identifier: 15668964

GI number: 15668964

Start: 705793

End: 706038

Strand: Reverse

Name: 15668964

Synonym: MJ0782.1

Alternate gene names: NA

Gene position: 706038-705793 (Counterclockwise)

Preceding gene: 15668974

Following gene: 15668963

Centisome position: 42.41

GC content: 29.67

Gene sequence:

>246_bases
TTGAAAGTAGAGATACTTCACAAAACGCCAAAGGGTTTCTTAATAGCCAGAGGAAAGAGAGAGATAAAGATTGGTTCAGT
AGTTATTTTTAAGAACAAAAAGATTGGTAAGGTAGTTGATATTTTTGGCCCAGTTGCTAAGCCCTATATAAAAATACTCC
CTATTAACAAAGATATAGAAGTTTCTGGAACTGCATATATAAAAAACGATAAATCTAAATATAAAAATACTGAGAAGAAA
AATTAA

Upstream 100 bases:

>100_bases
AAGTATATATACCTCTTCAATCCACATATATATAAAGTTTTCGAAAACTATATATAGTAGTTATGAATAAAGATAAATCA
GCATATATAGRGGGAGCAAT

Downstream 100 bases:

>100_bases
ATTTAAATGGTGTGGCTTATGGAGGCTCTCAAAACCAAAGAAAATGAAACAACAAAAGAAAAAAAACTCACAACAAAAGT
TGAAAAATCTGAAAAAAAAG

Product: H/ACA RNA-protein complex component Gar1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MKVEILHKTPKGFLIARGKREIKIGSVVIFKNKKIGKVVDIFGPVAKPYIKILPINKDIEVSGTAYIKNDKSKYKNTEKK
N

Sequences:

>Translated_81_residues
MKVEILHKTPKGFLIARGKREIKIGSVVIFKNKKIGKVVDIFGPVAKPYIKILPINKDIEVSGTAYIKNDKSKYKNTEKK
N
>Mature_81_residues
MKVEILHKTPKGFLIARGKREIKIGSVVIFKNKKIGKVVDIFGPVAKPYIKILPINKDIEVSGTAYIKNDKSKYKNTEKK
N

Specific function: Unknown

COG id: COG3277

COG function: function code J; RNA-binding protein involved in rRNA processing

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.thermoautotrophicum MTH886

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y78A_METJA (P81312)

Other databases:

- EMBL:   L77117
- RefSeq:   NP_247768.1
- ProteinModelPortal:   P81312
- SMR:   P81312
- GeneID:   1451660
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0782.1
- NMPDR:   fig|243232.1.peg.805
- TIGR:   MJ0782.1
- HOGENOM:   HBG539118
- OMA:   PINKDIE
- ProtClustDB:   PRK13149
- BioCyc:   MJAN243232:MJ_0782.1-MONOMER
- InterPro:   IPR007504
- InterPro:   IPR020321
- InterPro:   IPR009000
- ProDom:   PD064583

Pfam domain/function: PF04410 Gar1; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 9169; Mature: 9169

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVEILHKTPKGFLIARGKREIKIGSVVIFKNKKIGKVVDIFGPVAKPYIKILPINKDIE
CEEEEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCEEECCCCCCCCEEEEEECCCCCE
VSGTAYIKNDKSKYKNTEKKN
ECCEEEEECCCHHCCCCCCCC
>Mature Secondary Structure
MKVEILHKTPKGFLIARGKREIKIGSVVIFKNKKIGKVVDIFGPVAKPYIKILPINKDIE
CEEEEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCEEECCCCCCCCEEEEEECCCCCE
VSGTAYIKNDKSKYKNTEKKN
ECCEEEEECCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087