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The map label for this gene is rpl15p

Identifier: 15668654

GI number: 15668654

Start: 419628

End: 420059

Strand: Direct

Name: rpl15p

Synonym: MJ0477

Alternate gene names: 15668654

Gene position: 419628-420059 (Clockwise)

Preceding gene: 15668653

Following gene: 15668655

Centisome position: 25.2

GC content: 35.88

Gene sequence:

>432_bases
ATGATTAGAAAAAAGAAAAAAGTTAAAAAAATTAGAGGTTCAAGAACCTGTGGAGGAGGAAGCCACAAGAAGAGAAGAGG
GGCTGGAAACAAGGGAGGAAGAGGAATGGCTGGTGGGCATAAGCACAAATGGACGTGGATTATAAAATACTGCCCTGATT
ACTTTGGAAAGTATGGATTCAAGAGACACCCAAGCTTAGTTAAAAGATTAGAAACAATAAATGTTGGAGAGCTTGAAGAG
ATTGTATTAAAAAACCCAGATAAATTTGAAAAAGAAGATGATAAATTTGTTGTTGATGTAATTGAGTTAGGTTATGAGAA
AGTTTTAGGTAAAGGAAAAGTTACAATCCCAATGATTGTTAAAGCAGTTGAAGTTTCAGAGAAAGCAAGAGAGAAGATTG
AGGCAGTAGGTGGAGAGGTTGTTGAACTCTAA

Upstream 100 bases:

>100_bases
GAGGAGGTATTAAAAAACCATTCAGTGTTGGAGGAGCTTTAGGTTACAGAGGAGAGAAGATTAATGAGTTATTAGAAAAG
ATGATGTAAGGTGATGATTT

Downstream 100 bases:

>100_bases
ATTATTAACAATCTTCTTTTTATTTCTAATTTTTGATTTTGAAGTAAATAAATTTTTAGATGAGAATGGAGTATCTATTT
TTTTACAAAAAAATAAAGAT

Product: 50S ribosomal protein L15P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MIRKKKKVKKIRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGFKRHPSLVKRLETINVGELEE
IVLKNPDKFEKEDDKFVVDVIELGYEKVLGKGKVTIPMIVKAVEVSEKAREKIEAVGGEVVEL

Sequences:

>Translated_143_residues
MIRKKKKVKKIRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGFKRHPSLVKRLETINVGELEE
IVLKNPDKFEKEDDKFVVDVIELGYEKVLGKGKVTIPMIVKAVEVSEKAREKIEAVGGEVVEL
>Mature_143_residues
MIRKKKKVKKIRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGFKRHPSLVKRLETINVGELEE
IVLKNPDKFEKEDDKFVVDVIELGYEKVLGKGKVTIPMIVKAVEVSEKAREKIEAVGGEVVEL

Specific function: Binds to the 23S rRNA

COG id: COG0200

COG function: function code J; Ribosomal protein L15

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L15P family

Homologues:

Organism=Homo sapiens, GI4506625, Length=151, Percent_Identity=39.7350993377483, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17509867, Length=145, Percent_Identity=38.6206896551724, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6321335, Length=150, Percent_Identity=38.6666666666667, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17136880, Length=143, Percent_Identity=38.4615384615385, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL15_METJA (P54047)

Other databases:

- EMBL:   L77117
- PIR:   E64359
- RefSeq:   NP_247453.1
- ProteinModelPortal:   P54047
- SMR:   P54047
- GeneID:   1451339
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0477
- NMPDR:   fig|243232.1.peg.490
- TIGR:   MJ0477
- HOGENOM:   HBG727142
- OMA:   GSRTCGG
- ProtClustDB:   PRK06419
- BioCyc:   MJAN243232:MJ_0477-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01341_A
- InterPro:   IPR001196
- InterPro:   IPR021131

Pfam domain/function: PF00828 Ribosomal_L18e; SSF52080 Ribosomal_L18e/L15

EC number: NA

Molecular weight: Translated: 16107; Mature: 16107

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKKKKVKKIRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGF
CCCHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCC
KRHPSLVKRLETINVGELEEIVLKNPDKFEKEDDKFVVDVIELGYEKVLGKGKVTIPMIV
CCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
KAVEVSEKAREKIEAVGGEVVEL
HHHHHHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MIRKKKKVKKIRGSRTCGGGSHKKRRGAGNKGGRGMAGGHKHKWTWIIKYCPDYFGKYGF
CCCHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHCCC
KRHPSLVKRLETINVGELEEIVLKNPDKFEKEDDKFVVDVIELGYEKVLGKGKVTIPMIV
CCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
KAVEVSEKAREKIEAVGGEVVEL
HHHHHHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087