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The map label for this gene is ycbY [C]

Identifier: 15668614

GI number: 15668614

Start: 392088

End: 393233

Strand: Direct

Name: ycbY [C]

Synonym: MJ0438

Alternate gene names: 15668614

Gene position: 392088-393233 (Clockwise)

Preceding gene: 15668605

Following gene: 15668616

Centisome position: 23.55

GC content: 31.33

Gene sequence:

>1146_bases
ATGGATTACTATGTTACACTATCCCCGGGGCTTGAAAAAATCTCCAAAAATGAGATTGAATCTTTTGGTGGAAAAATTAA
AGAGATTAGAGAAAATAAAGGAAGAATATTTTTTAGTGGTGATTTAAAACTAATTCCTAAGATTAACTACCTCTCAAGAA
CTATAGAAAGGATGAATATCTTACTACATAGGGAAGAGATTCCAAACATAGCCTTAGATGATATTTATAAGAGAGTTTAT
AATATTGATTGGACTGAATGGATAAAAGAAAATCAATCTTTTGCTATTCGCCCATTAAGGGCTGGAGAACATAATTTTAC
ATCAATAGACATTGGAAGAGTTGCTGGTGAAGCAGTAATAAAATCATATCAGAGAGATAAAAACATTAGGCTTAAAGTTA
ATTTAGATGAACCAGATGTAATTGTTAGGGTTGAAGTTATATTTGATGAGCTAATTGTTGGAATTGATACCACAGGGGAT
ATTGCATTAGATAAGAGAGGATATAGAGTTTTTAATCACCCAGCACATTTAAATGCCACTATTGCCTCGTCATTAGTTTA
TTTAAGTGATTGGAAAGATGATGAGATGTTATTAGACCCAATGTGTGGAAGTGGGACTATTCCAATAGAGGGAGCTTTGA
TGAAGAGGAATATCCCACCAGGAAAGTTTAGAGAGAATAAATATGGTTTTAAGTTTATTGATATTTTTGGCTATGAGTTA
TTAGATAAAATAAAAAAAGAGATTGTTGAAAATAAAAACATCTACAAAATAATTGGTTTAGATAAAAATCAAAAATACTT
GGATGGAGCTAAAGATAATGCCAAAAATGCTGAGGTTTTGGATACTATAGAATTTATCTGTGGTGATGCTACAAAATTGC
ATGAAAAATTTAATGAAAGTGATGTTATTATAGCAAATCCACCTTATGGCATAAGGATAGGTAGCAAAAGATCAGTTAAA
AAGCTATACGATGAATTTTTATCCTCTGCAAAGGAAATTATGCACGGCTCTTCAAGGCTGATAGTTATAACTGCTGAAGA
TAAGATGTTTAAAGATGCTATAGCAAAAAATAACTTTGAGGTTAAGGAGGAGTTCAATGTCATGTTTGGTGGTTTGATGA
CAAGGGTGTTTTATTTAACTTTATAA

Upstream 100 bases:

>100_bases
CATTATATATTAAATAAGGTATTTGGATGCCTAAAGGCATCAATATTCAATAAATAAATTTATCTCTGCGAAAGTCCATA
ATAAAAGAAGAGGGATTTTT

Downstream 100 bases:

>100_bases
TAATCTCTTTATAGCATTCCAAACCAAATAACTTTGGGGTTTCAATGTTCCTTTTTGTGGATTTAAGAATAAAATATTTT
TCTTAACTAAAAATTCTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDYYVTLSPGLEKISKNEIESFGGKIKEIRENKGRIFFSGDLKLIPKINYLSRTIERMNILLHREEIPNIALDDIYKRVY
NIDWTEWIKENQSFAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIVGIDTTGD
IALDKRGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGALMKRNIPPGKFRENKYGFKFIDIFGYEL
LDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVK
KLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFEVKEEFNVMFGGLMTRVFYLTL

Sequences:

>Translated_381_residues
MDYYVTLSPGLEKISKNEIESFGGKIKEIRENKGRIFFSGDLKLIPKINYLSRTIERMNILLHREEIPNIALDDIYKRVY
NIDWTEWIKENQSFAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIVGIDTTGD
IALDKRGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGALMKRNIPPGKFRENKYGFKFIDIFGYEL
LDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVK
KLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFEVKEEFNVMFGGLMTRVFYLTL
>Mature_381_residues
MDYYVTLSPGLEKISKNEIESFGGKIKEIRENKGRIFFSGDLKLIPKINYLSRTIERMNILLHREEIPNIALDDIYKRVY
NIDWTEWIKENQSFAIRPLRAGEHNFTSIDIGRVAGEAVIKSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIVGIDTTGD
IALDKRGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGALMKRNIPPGKFRENKYGFKFIDIFGYEL
LDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVK
KLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFEVKEEFNVMFGGLMTRVFYLTL

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain

Homologues:

Organism=Escherichia coli, GI1787181, Length=310, Percent_Identity=26.7741935483871, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y438_METJA (Q57880)

Other databases:

- EMBL:   L77117
- PIR:   F64354
- RefSeq:   NP_247412.1
- ProteinModelPortal:   Q57880
- SMR:   Q57880
- GeneID:   1451298
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0438
- NMPDR:   fig|243232.1.peg.449
- TIGR:   MJ0438
- HOGENOM:   HBG729420
- OMA:   FFLGIDT
- ProtClustDB:   CLSK688067
- BioCyc:   MJAN243232:MJ_0438-MONOMER
- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114
- SMART:   SM00981

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020

EC number: NA

Molecular weight: Translated: 43739; Mature: 43739

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00092 N6_MTASE; PS51165 THUMP; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYYVTLSPGLEKISKNEIESFGGKIKEIRENKGRIFFSGDLKLIPKINYLSRTIERMNI
CCEEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCEEEECCCHHHHHHHHHHHH
LLHREEIPNIALDDIYKRVYNIDWTEWIKENQSFAIRPLRAGEHNFTSIDIGRVAGEAVI
HHHHHHCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHH
KSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIVGIDTTGDIALDKRGYRVFNHPAHLNAT
HHHHCCCCEEEEEECCCCCEEEEEHEEHHHHHEECCCCCCEEECCCCCEEECCCCCCCHH
IASSLVYLSDWKDDEMLLDPMCGSGTIPIEGALMKRNIPPGKFRENKYGFKFIDIFGYEL
HHHHEEEEECCCCCCEEECCCCCCCCCCCCCHHEECCCCCCCCCCCCCCEEEEEHHHHHH
LDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNES
HHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCC
DVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFE
CEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCC
VKEEFNVMFGGLMTRVFYLTL
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDYYVTLSPGLEKISKNEIESFGGKIKEIRENKGRIFFSGDLKLIPKINYLSRTIERMNI
CCEEEEECCCHHHHHHHHHHHHCCHHHHHHCCCCEEEEECCEEEECCCHHHHHHHHHHHH
LLHREEIPNIALDDIYKRVYNIDWTEWIKENQSFAIRPLRAGEHNFTSIDIGRVAGEAVI
HHHHHHCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHH
KSYQRDKNIRLKVNLDEPDVIVRVEVIFDELIVGIDTTGDIALDKRGYRVFNHPAHLNAT
HHHHCCCCEEEEEECCCCCEEEEEHEEHHHHHEECCCCCCEEECCCCCEEECCCCCCCHH
IASSLVYLSDWKDDEMLLDPMCGSGTIPIEGALMKRNIPPGKFRENKYGFKFIDIFGYEL
HHHHEEEEECCCCCCEEECCCCCCCCCCCCCHHEECCCCCCCCCCCCCCEEEEEHHHHHH
LDKIKKEIVENKNIYKIIGLDKNQKYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNES
HHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCC
DVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFE
CEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCC
VKEEFNVMFGGLMTRVFYLTL
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087