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The map label for this gene is secD [C]

Identifier: 15668282

GI number: 15668282

Start: 106958

End: 108148

Strand: Direct

Name: secD [C]

Synonym: MJ0111

Alternate gene names: 15668282

Gene position: 106958-108148 (Clockwise)

Preceding gene: 15668279

Following gene: 15668285

Centisome position: 6.42

GC content: 33.17

Gene sequence:

>1191_bases
ATGGATATATCAAAACTACTGAAAGATAGAAAAATACTGATTTTAATTATATTTGTTACTCTATCTGTATTCTTAATCGT
ATTTAAAGGACTTGATTTTGGGATTGATTTAAGTGGAGGAACGATTATTGTTTTAAAAGCAGAGAAACCAATGAGTGACA
AAGAAATAGAGGCAACAATTAAAATTATTACAGAAAGATTGAATTATAATGGATTAAACGATGTAGTAATATATCCAAGA
GGAAATGATGAAATTATTGTAGAAATTCCAAAAAGTTGTGATACTGATAGGATAATTAAAATATTGAAACAACAAGGGGT
TTTTGTAGCAAAGATTGACAATATAACTGCATATACTGGAAGTGATGTGCAGAATGTTGAACTTCCAACAAAGATTCCAC
AAGGGGAAACTTGGGCTTATGGAGTTCCTTTTGAATTAACATTAGAAGGAGCTAAAAAGTTTGCCGAAGTTGCTAAAGGT
AAGGCATATCATAAAGTTGAGTTGTATATGGATGGAAAGTTAATCTCAGCTCCTGTCTTATCTCCAGACTTAGCTGATGG
AAAACCTCATCCACAGCAGGTTATTACTGTTGGAGCATACCCTCCAACTAAAGAAGAGATTGACGAAGCAATGGCTATTT
ATTCAGCTCTAAAATCTGGAGCTTTGCCAGTAAAATTGGATATTGAATATATATCTACAATATCTCCAGAATTTGGTAAA
GAATTTTTAAAAGGAACAGCTATTGCTTTATTATTGGCGTTTATAGCTGTTGGGATAATAGTCAGTATTAGATACAAACA
GCCAAAGATAGCAATCCCAATTTTAATAACCTGTATATCAGAAGTTATTATTATATTGGGCTTTGCTTCTTTAATAGATT
GGAAGTTAGATTTACCTTCAATAGCAGGGATTATTGCTGCTGTAGGAACTGGAGTTGATAACCAAATTGTCATAACTGAT
GAGGCATTAAAGAGAGGAGCTGGTAAGATAAGGGCAAGCATTAAAAGGGCTTTCTTTATAATATTTGCCTCTGCGGCAAC
ATCCATCGCAGCTATGCTTCCTCTATTTGTTCTTGGGGTGGGAATGTTAAAAGGATTTGCAATAACTACAATAGCAGGGG
TTTTAATAGGGATATTTATAACAAGACCCGCATTTGCAAGAATTATAGAAGAGATGTTTAAAAAGTTTTAA

Upstream 100 bases:

>100_bases
ATAACAGTTATATCAAAGTCCATATTAATCACCACAAATGTTATAAATTTTAAAAGAGTTTGTTAAAATTTACCAACTTA
TATAGGTATAGGTGGGATAA

Downstream 100 bases:

>100_bases
AAATCCAAACTATTAAATTTATTTCTATTTTTTTAGAAACTAAAAGAGTTAAAAATTTAGTTCCTATTTTTCAAATTTAT
TGAATTAGACTAAATAAAAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDISKLLKDRKILILIIFVTLSVFLIVFKGLDFGIDLSGGTIIVLKAEKPMSDKEIEATIKIITERLNYNGLNDVVIYPR
GNDEIIVEIPKSCDTDRIIKILKQQGVFVAKIDNITAYTGSDVQNVELPTKIPQGETWAYGVPFELTLEGAKKFAEVAKG
KAYHKVELYMDGKLISAPVLSPDLADGKPHPQQVITVGAYPPTKEEIDEAMAIYSALKSGALPVKLDIEYISTISPEFGK
EFLKGTAIALLLAFIAVGIIVSIRYKQPKIAIPILITCISEVIIILGFASLIDWKLDLPSIAGIIAAVGTGVDNQIVITD
EALKRGAGKIRASIKRAFFIIFASAATSIAAMLPLFVLGVGMLKGFAITTIAGVLIGIFITRPAFARIIEEMFKKF

Sequences:

>Translated_396_residues
MDISKLLKDRKILILIIFVTLSVFLIVFKGLDFGIDLSGGTIIVLKAEKPMSDKEIEATIKIITERLNYNGLNDVVIYPR
GNDEIIVEIPKSCDTDRIIKILKQQGVFVAKIDNITAYTGSDVQNVELPTKIPQGETWAYGVPFELTLEGAKKFAEVAKG
KAYHKVELYMDGKLISAPVLSPDLADGKPHPQQVITVGAYPPTKEEIDEAMAIYSALKSGALPVKLDIEYISTISPEFGK
EFLKGTAIALLLAFIAVGIIVSIRYKQPKIAIPILITCISEVIIILGFASLIDWKLDLPSIAGIIAAVGTGVDNQIVITD
EALKRGAGKIRASIKRAFFIIFASAATSIAAMLPLFVLGVGMLKGFAITTIAGVLIGIFITRPAFARIIEEMFKKF
>Mature_396_residues
MDISKLLKDRKILILIIFVTLSVFLIVFKGLDFGIDLSGGTIIVLKAEKPMSDKEIEATIKIITERLNYNGLNDVVIYPR
GNDEIIVEIPKSCDTDRIIKILKQQGVFVAKIDNITAYTGSDVQNVELPTKIPQGETWAYGVPFELTLEGAKKFAEVAKG
KAYHKVELYMDGKLISAPVLSPDLADGKPHPQQVITVGAYPPTKEEIDEAMAIYSALKSGALPVKLDIEYISTISPEFGK
EFLKGTAIALLLAFIAVGIIVSIRYKQPKIAIPILITCISEVIIILGFASLIDWKLDLPSIAGIIAAVGTGVDNQIVITD
EALKRGAGKIRASIKRAFFIIFASAATSIAAMLPLFVLGVGMLKGFAITTIAGVLIGIFITRPAFARIIEEMFKKF

Specific function: Involved In Protein Export. [C]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family

Homologues:

Organism=Escherichia coli, GI1786610, Length=159, Percent_Identity=25.7861635220126, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y111_METJA (Q57575)

Other databases:

- EMBL:   L77117
- PIR:   G64313
- RefSeq:   NP_247075.1
- ProteinModelPortal:   Q57575
- GeneID:   1450952
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0111
- NMPDR:   fig|243232.1.peg.112
- TIGR:   MJ0111
- HOGENOM:   HBG541641
- OMA:   EIVETNT
- ProtClustDB:   PRK08343
- BioCyc:   MJAN243232:MJ_0111-MONOMER
- InterPro:   IPR022813
- InterPro:   IPR022646

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF

EC number: NA

Molecular weight: Translated: 43053; Mature: 43053

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb9a4e64)-; HASH(0xc0b97c8)-; HASH(0xbed3e48)-; HASH(0xbeb37b4)-; HASH(0xc068fcc)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISKLLKDRKILILIIFVTLSVFLIVFKGLDFGIDLSGGTIIVLKAEKPMSDKEIEATI
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCCHHHHHHH
KIITERLNYNGLNDVVIYPRGNDEIIVEIPKSCDTDRIIKILKQQGVFVAKIDNITAYTG
HHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCEEEECC
SDVQNVELPTKIPQGETWAYGVPFELTLEGAKKFAEVAKGKAYHKVELYMDGKLISAPVL
CCCCCCCCCCCCCCCCCEEECCCEEEEHHHHHHHHHHHCCCCEEEEEEEECCEEEECCCC
SPDLADGKPHPQQVITVGAYPPTKEEIDEAMAIYSALKSGALPVKLDIEYISTISPEFGK
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHH
EFLKGTAIALLLAFIAVGIIVSIRYKQPKIAIPILITCISEVIIILGFASLIDWKLDLPS
HHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IAGIIAAVGTGVDNQIVITDEALKRGAGKIRASIKRAFFIIFASAATSIAAMLPLFVLGV
HHHHHHHHCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHH
GMLKGFAITTIAGVLIGIFITRPAFARIIEEMFKKF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCH
>Mature Secondary Structure
MDISKLLKDRKILILIIFVTLSVFLIVFKGLDFGIDLSGGTIIVLKAEKPMSDKEIEATI
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCCHHHHHHH
KIITERLNYNGLNDVVIYPRGNDEIIVEIPKSCDTDRIIKILKQQGVFVAKIDNITAYTG
HHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCEEEECC
SDVQNVELPTKIPQGETWAYGVPFELTLEGAKKFAEVAKGKAYHKVELYMDGKLISAPVL
CCCCCCCCCCCCCCCCCEEECCCEEEEHHHHHHHHHHHCCCCEEEEEEEECCEEEECCCC
SPDLADGKPHPQQVITVGAYPPTKEEIDEAMAIYSALKSGALPVKLDIEYISTISPEFGK
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCHHHHH
EFLKGTAIALLLAFIAVGIIVSIRYKQPKIAIPILITCISEVIIILGFASLIDWKLDLPS
HHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IAGIIAAVGTGVDNQIVITDEALKRGAGKIRASIKRAFFIIFASAATSIAAMLPLFVLGV
HHHHHHHHCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHH
GMLKGFAITTIAGVLIGIFITRPAFARIIEEMFKKF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087