| Definition | Methanocaldococcus jannaschii DSM 2661 chromosome, complete genome. |
|---|---|
| Accession | NC_000909 |
| Length | 1,664,970 |
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The map label for this gene is 15668275
Identifier: 15668275
GI number: 15668275
Start: 99243
End: 101234
Strand: Direct
Name: 15668275
Synonym: MJ0104
Alternate gene names: NA
Gene position: 99243-101234 (Clockwise)
Preceding gene: 15668274
Following gene: 15668278
Centisome position: 5.96
GC content: 32.13
Gene sequence:
>1992_bases TTGCAGAATTGGTTTAAAAGTGGTGATAGCTTGAATTTAGTTGATTTATACGTAAAGAAATTCATGGATTTGATTGAGAT TGAGAGAAGATGTGAGATGGATTTTCATAAAAATGAGATTATTAAATTAGGCAAAAAGAGAGAGAATGTTGGAAGAGCAA TTTTAAATTTAAAAGGGAAATTTTTAGGAGAGAGCTTAGGTTGCACCATTGTAAGATTTGGGAGAAAAAAGCCATTTAAA ACAGAAATATCTCCGGGAGACGTTGTTTTAGTTAGTAAAGAAAACCCATTGCAGAGTGATTTATATGCGAATGTCATATA CGTAGGAAAGAACTTTATAGATGTTGCCTTTGATGTTGATGTCCCAAAATGGGTTTATAAAGAAAGAGTAAGAGTTGATT TATACGTAAATGACATAACATTTAAAAGAATGAAAGAAGCTTTAAGAGAATTTGCAAGAAAGAGGGATAAATTAGCTTAT ATAATATTAGGCATTGAACACCCAGAAAAACCTTTAAGAGAGGACATCAAATTAGAGTTCTATGATAAAAATTTAAATGA ATCACAAAAATTAGCAGTTAAAAAGGCAGTTTTAAGTAGGGATTTGTATTTAATTCACGGCCCTCCAGGAACTGGAAAGA CAAGAACTATAACAGAGGTTATCGTCCAAGAGGTTAAATTTAACAAACATAAGGTTTTAGCTACAGCAGATTCAAACATA GCAGCAGATAACATCTTAGAGTACCTAATAAAAAAATATCCAGATTTAAAAGTTGTTAGGGTAGGGCATCCAACAAGGAT TTCAAAGGATTTGATTCAACACTCTCTCCCCTATCTAATTGAAAATCATGAGAAATATCAAGAAATCCTAGCTTTAAGAG AGAAGATTAAAGAAATTAAAGAACAGAGGGATAAATTTTTAAAGCCCTCCCCAAGATGGAGGAGAGGAATGAGTGATGAG CAGATTTTAAAAGTAGCTAAAAGAAAGAAATCCTACAGAGGGATTCCTAAGGAAAAAATCGTTAGTATGGCAGAATGGAT TATAAGAAATAAAAAGATTAAAAGAATCATCAATAATTTGGATGAAATTACTGAAAAAATCATGAATGAGATTTTAGCAG AGGCAGATGTTATCGTAGCAACAAACTCTATGGCTGGTTCAGAAATTTTGAAAGGCTGGGAGTTTGATGTGATTGTTATT GATGAAGGAAGCCAAGCAATGGAGCCTTCTTGCTTAATTCCAATTGTTAAAGGAAGAAAGCTAATCATGGCTGGAGACCA TAAGCAATTACCACCAACAGTTTTAAGTGAGAATGAAGAGCTAAAAAAGACTTTATTTGAGAGATTGATTAAAAAATATC CAGAATTTTCATCAATATTGGAGATTCAGTATAGAATGAACGAAAAAATCATGGAATTCCCAAATAAGATGTTTTATAAC AACAAATTAAAGGCAGATGAGAGCGTTAAAAACATCACTTTATTAGATTTAGTTAAAGAGGAGGAGATTGATGAGGTTGA TAGAGATATTATAAACGAAATCCCAGTTCAATTTATAAATGTTGAAGGGATTGAAAGGAAAGATAAAGAATCTCCATCTT ATTACAACATAGAAGAGGCGGAGAAGGTTTTAGAGATAGTTAAAAAACTTGTAAAGTATAAGATACCAACAAACGTTATA ACTCCTTACGATGCCCAAGTTAGGTATTTGAGGAGGTTGTTTGAAGAGCATAACATAGACATAGAGGTTAATACAGTAGA TGGATTCCAAGGAAGGGAGAATGAGGCTATAGTTATCTCATTCGTTAGAACAAAGAACTTTGGATTTTTGAAGGATTTGA GGAGGTTGAATGTTGCCATAACAAGAGCTAAGAGAAAGCTAATTTTGATAGGCAATGAAAATCTATTGAAGCAAGATAAA GTCTATAATGAAATGATAAAGTGGGCAAAATCTGTTGAAGAAGAACACAAAAATAAAATTATCCAAAAATAA
Upstream 100 bases:
>100_bases AAGGATAGGGTAATTCAGATAATTAACTGCAATAATGAACAAAATCTAATAGGGAAGACAGTTAAAGTGAGAATTTTGAG AAATAAGGATAATATAATAG
Downstream 100 bases:
>100_bases ATTAATACATTCTAAATGTTATCTCTACATGGATGGATTCATATTTAACACATTTAGCAAATCCCAACATTTCCAATTGA ACCCTTCCAGCTATAATTTC
Product: DNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 663; Mature: 663
Protein sequence:
>663_residues MQNWFKSGDSLNLVDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENVGRAILNLKGKFLGESLGCTIVRFGRKKPFK TEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVDVPKWVYKERVRVDLYVNDITFKRMKEALREFARKRDKLAY IILGIEHPEKPLREDIKLEFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNI AADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRRGMSDE QILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVI DEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLSENEELKKTLFERLIKKYPEFSSILEIQYRMNEKIMEFPNKMFYN NKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKYKIPTNVI TPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDK VYNEMIKWAKSVEEEHKNKIIQK
Sequences:
>Translated_663_residues MQNWFKSGDSLNLVDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENVGRAILNLKGKFLGESLGCTIVRFGRKKPFK TEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVDVPKWVYKERVRVDLYVNDITFKRMKEALREFARKRDKLAY IILGIEHPEKPLREDIKLEFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNI AADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRRGMSDE QILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVI DEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLSENEELKKTLFERLIKKYPEFSSILEIQYRMNEKIMEFPNKMFYN NKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKYKIPTNVI TPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDK VYNEMIKWAKSVEEEHKNKIIQK >Mature_663_residues MQNWFKSGDSLNLVDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENVGRAILNLKGKFLGESLGCTIVRFGRKKPFK TEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVDVPKWVYKERVRVDLYVNDITFKRMKEALREFARKRDKLAY IILGIEHPEKPLREDIKLEFYDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNI AADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRRGMSDE QILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVI DEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLSENEELKKTLFERLIKKYPEFSSILEIQYRMNEKIMEFPNKMFYN NKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKYKIPTNVI TPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVISFVRTKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDK VYNEMIKWAKSVEEEHKNKIIQK
Specific function: Unknown
COG id: COG1112
COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA2/NAM7 helicase family
Homologues:
Organism=Homo sapiens, GI119392094, Length=669, Percent_Identity=32.1375186846039, Blast_Score=273, Evalue=3e-73, Organism=Homo sapiens, GI18375673, Length=589, Percent_Identity=30.3904923599321, Blast_Score=206, Evalue=4e-53, Organism=Homo sapiens, GI113722133, Length=544, Percent_Identity=27.9411764705882, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI122937299, Length=344, Percent_Identity=33.7209302325581, Blast_Score=145, Evalue=1e-34, Organism=Homo sapiens, GI156105695, Length=576, Percent_Identity=27.2569444444444, Blast_Score=140, Evalue=4e-33, Organism=Homo sapiens, GI156105693, Length=576, Percent_Identity=27.2569444444444, Blast_Score=140, Evalue=4e-33, Organism=Homo sapiens, GI254826809, Length=489, Percent_Identity=28.0163599182004, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI194272168, Length=537, Percent_Identity=27.56052141527, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI14211540, Length=537, Percent_Identity=27.56052141527, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI255759910, Length=299, Percent_Identity=30.4347826086957, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI14251207, Length=319, Percent_Identity=30.0940438871473, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI255759908, Length=306, Percent_Identity=31.0457516339869, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI38788372, Length=517, Percent_Identity=23.9845261121857, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI28626521, Length=290, Percent_Identity=29.6551724137931, Blast_Score=103, Evalue=7e-22, Organism=Homo sapiens, GI255759906, Length=261, Percent_Identity=29.5019157088123, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI54792138, Length=281, Percent_Identity=27.7580071174377, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17510163, Length=576, Percent_Identity=30.5555555555556, Blast_Score=201, Evalue=1e-51, Organism=Caenorhabditis elegans, GI71981659, Length=328, Percent_Identity=32.9268292682927, Blast_Score=140, Evalue=2e-33, Organism=Caenorhabditis elegans, GI17533985, Length=288, Percent_Identity=29.1666666666667, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17533987, Length=288, Percent_Identity=29.1666666666667, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI133958006, Length=518, Percent_Identity=24.1312741312741, Blast_Score=108, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17538027, Length=279, Percent_Identity=28.3154121863799, Blast_Score=79, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17535407, Length=286, Percent_Identity=25.5244755244755, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17541326, Length=259, Percent_Identity=26.6409266409266, Blast_Score=75, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71986364, Length=523, Percent_Identity=24.4741873804971, Blast_Score=75, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17531513, Length=528, Percent_Identity=25, Blast_Score=74, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17531515, Length=528, Percent_Identity=25, Blast_Score=74, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322835, Length=560, Percent_Identity=34.2857142857143, Blast_Score=263, Evalue=1e-70, Organism=Saccharomyces cerevisiae, GI6323726, Length=535, Percent_Identity=32.8971962616822, Blast_Score=206, Evalue=7e-54, Organism=Saccharomyces cerevisiae, GI6323462, Length=546, Percent_Identity=29.1208791208791, Blast_Score=184, Evalue=4e-47, Organism=Saccharomyces cerevisiae, GI6321024, Length=557, Percent_Identity=29.9820466786355, Blast_Score=154, Evalue=3e-38, Organism=Saccharomyces cerevisiae, GI6321958, Length=288, Percent_Identity=34.7222222222222, Blast_Score=138, Evalue=2e-33, Organism=Drosophila melanogaster, GI18859757, Length=561, Percent_Identity=31.9073083778966, Blast_Score=210, Evalue=3e-54, Organism=Drosophila melanogaster, GI24660647, Length=499, Percent_Identity=27.0541082164329, Blast_Score=146, Evalue=4e-35, Organism=Drosophila melanogaster, GI221330969, Length=500, Percent_Identity=27.2, Blast_Score=145, Evalue=6e-35, Organism=Drosophila melanogaster, GI281363531, Length=500, Percent_Identity=26.2, Blast_Score=135, Evalue=1e-31, Organism=Drosophila melanogaster, GI281363529, Length=500, Percent_Identity=26.2, Blast_Score=135, Evalue=1e-31, Organism=Drosophila melanogaster, GI24640932, Length=364, Percent_Identity=29.1208791208791, Blast_Score=129, Evalue=8e-30, Organism=Drosophila melanogaster, GI161077698, Length=364, Percent_Identity=29.1208791208791, Blast_Score=129, Evalue=8e-30, Organism=Drosophila melanogaster, GI62471854, Length=314, Percent_Identity=26.4331210191083, Blast_Score=114, Evalue=3e-25, Organism=Drosophila melanogaster, GI24656854, Length=314, Percent_Identity=26.4331210191083, Blast_Score=113, Evalue=4e-25, Organism=Drosophila melanogaster, GI24649577, Length=493, Percent_Identity=26.369168356998, Blast_Score=102, Evalue=8e-22, Organism=Drosophila melanogaster, GI281361618, Length=522, Percent_Identity=23.9463601532567, Blast_Score=100, Evalue=5e-21, Organism=Drosophila melanogaster, GI281361616, Length=522, Percent_Identity=23.9463601532567, Blast_Score=100, Evalue=6e-21, Organism=Drosophila melanogaster, GI45550425, Length=351, Percent_Identity=25.6410256410256, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI45553113, Length=311, Percent_Identity=27.3311897106109, Blast_Score=98, Evalue=2e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y104_METJA (Q57568)
Other databases:
- EMBL: L77117 - PIR: H64312 - RefSeq: NP_247068.1 - ProteinModelPortal: Q57568 - SMR: Q57568 - GeneID: 1450945 - GenomeReviews: L77117_GR - KEGG: mja:MJ_0104 - NMPDR: fig|243232.1.peg.105 - TIGR: MJ0104 - HOGENOM: HBG713547 - OMA: GHPSRVS - ProtClustDB: CLSK876071 - BioCyc: MJAN243232:MJ_0104-MONOMER - InterPro: IPR014001 - InterPro: IPR004483 - SMART: SM00487 - TIGRFAMs: TIGR00376
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77574; Mature: 77574
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNWFKSGDSLNLVDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENVGRAILNLKGK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHH FLGESLGCTIVRFGRKKPFKTEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVD HHCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHEEEEECCCEEEEEEECC VPKWVYKERVRVDLYVNDITFKRMKEALREFARKRDKLAYIILGIEHPEKPLREDIKLEF CCHHHHHCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHCCEEEE YDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNI ECCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC AADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIK CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHH EQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNL HHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH DEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIVKGRK HHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCE LIMAGDHKQLPPTVLSENEELKKTLFERLIKKYPEFSSILEIQYRMNEKIMEFPNKMFYN EEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCC NKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEGIERKDKESPSYYNIEEA CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHH EKVLEIVKKLVKYKIPTNVITPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVIS HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEE FVRTKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKSVEEEHKNKI EEECCCCHHHHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC IQK CCC >Mature Secondary Structure MQNWFKSGDSLNLVDLYVKKFMDLIEIERRCEMDFHKNEIIKLGKKRENVGRAILNLKGK CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHH FLGESLGCTIVRFGRKKPFKTEISPGDVVLVSKENPLQSDLYANVIYVGKNFIDVAFDVD HHCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHEEEEECCCEEEEEEECC VPKWVYKERVRVDLYVNDITFKRMKEALREFARKRDKLAYIILGIEHPEKPLREDIKLEF CCHHHHHCCEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHCCEEEE YDKNLNESQKLAVKKAVLSRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNI ECCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC AADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIK CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHH EQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNL HHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH DEITEKIMNEILAEADVIVATNSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPIVKGRK HHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCCE LIMAGDHKQLPPTVLSENEELKKTLFERLIKKYPEFSSILEIQYRMNEKIMEFPNKMFYN EEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHCC NKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVEGIERKDKESPSYYNIEEA CCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHH EKVLEIVKKLVKYKIPTNVITPYDAQVRYLRRLFEEHNIDIEVNTVDGFQGRENEAIVIS HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEE FVRTKNFGFLKDLRRLNVAITRAKRKLILIGNENLLKQDKVYNEMIKWAKSVEEEHKNKI EEECCCCHHHHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC IQK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087