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The map label for this gene is frhD

Identifier: 15668200

GI number: 15668200

Start: 31255

End: 31806

Strand: Direct

Name: frhD

Synonym: MJ0030

Alternate gene names: 15668200

Gene position: 31255-31806 (Clockwise)

Preceding gene: 15668194

Following gene: 15668201

Centisome position: 1.88

GC content: 33.33

Gene sequence:

>552_bases
ATGAATGAAACCATGAAGGCAGAGATAGAAAGCCAAGATGATGAATTGTTTGATTTAACCCCTTCATATTTAAAAAAAGA
GATTATGGTCTTAGCTTGTGGTAATATACTATTTGCCGATGATGGCTTTAGCGTTCATGTCATTGAAAAATTAAACAAAA
TCTTAACTGACAAAGAAAAACAAAAAATTGCCTTAGTTGATGCTGGAGCTGGAGCCCCTCAGCAAGTTTTAACATTAATA
GATGAAAACTCTAAAACAAAAAAAATAATTGTTGTTGATGTAATTGATTGGGGAATAAAACCAGGAGAAATAAAAATAAT
TGAGAAGGATGAGCTTCCAAATCCAAAATATCATAGATTAGATTCTCATGACTGGCCTTTAGCTCCTTTATTAAGGGAAG
TTGCTGAAAAATATAATATAGAGGTTAAAGTTGTCGGCTGTCAAGCCAAGTATATTTCTGAGCCAGATGTTTATATTGGG
TTGAGTGAAGAGGTTGAAAAAGCCGTTGATAAGGCAGTTGAGATAATTCTTAGAGAGTTGAGAGGTGATTAA

Upstream 100 bases:

>100_bases
AATATAGACATCCAAAGATGTCAAAGTTCCAAAGTGCATATATAAACTGCGAAAGTCCTGTTTCTTTGGAAGCTTAAATT
AAACCCTTAAAAAACTTAAA

Downstream 100 bases:

>100_bases
AGTGGTTAAAGTTGCTCATGTTCAATTATGCAGTTGTTGCGGTTGCTTAGTGTCTTTAGCAGACACATATGAAAAGCTTT
TAGATGTTTTGAATTCAATT

Product: coenzyme F420-reducing hydrogenase subunit delta

Products: reduced coenzyme F420

Alternate protein names: Putative coenzyme F420 hydrogenase-processing subunit

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MNETMKAEIESQDDELFDLTPSYLKKEIMVLACGNILFADDGFSVHVIEKLNKILTDKEKQKIALVDAGAGAPQQVLTLI
DENSKTKKIIVVDVIDWGIKPGEIKIIEKDELPNPKYHRLDSHDWPLAPLLREVAEKYNIEVKVVGCQAKYISEPDVYIG
LSEEVEKAVDKAVEIILRELRGD

Sequences:

>Translated_183_residues
MNETMKAEIESQDDELFDLTPSYLKKEIMVLACGNILFADDGFSVHVIEKLNKILTDKEKQKIALVDAGAGAPQQVLTLI
DENSKTKKIIVVDVIDWGIKPGEIKIIEKDELPNPKYHRLDSHDWPLAPLLREVAEKYNIEVKVVGCQAKYISEPDVYIG
LSEEVEKAVDKAVEIILRELRGD
>Mature_183_residues
MNETMKAEIESQDDELFDLTPSYLKKEIMVLACGNILFADDGFSVHVIEKLNKILTDKEKQKIALVDAGAGAPQQVLTLI
DENSKTKKIIVVDVIDWGIKPGEIKIIEKDELPNPKYHRLDSHDWPLAPLLREVAEKYNIEVKVVGCQAKYISEPDVYIG
LSEEVEKAVDKAVEIILRELRGD

Specific function: Protease Involved In The C-Terminal Processing Of Hyce, The Large Subunit Of Hydrogenase 3. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FRHD_METJA (Q60339)

Other databases:

- EMBL:   L77117
- PIR:   F64303
- RefSeq:   NP_246993.1
- ProteinModelPortal:   Q60339
- SMR:   Q60339
- GeneID:   1450868
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0030
- NMPDR:   fig|243232.1.peg.30
- TIGR:   MJ0030
- HOGENOM:   HBG730505
- OMA:   YNIEVKV
- ProtClustDB:   CLSK876041
- BioCyc:   MJAN243232:MJ_0030-MONOMER
- InterPro:   IPR004411
- InterPro:   IPR000671
- Gene3D:   G3DSA:3.40.50.1450
- PRINTS:   PR00446
- TIGRFAMs:   TIGR00130
- TIGRFAMs:   TIGR00072

Pfam domain/function: PF01750 HycI

EC number: 1.12.98.1

Molecular weight: Translated: 20628; Mature: 20628

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNETMKAEIESQDDELFDLTPSYLKKEIMVLACGNILFADDGFSVHVIEKLNKILTDKEK
CCCCCCCCCCCCCCCEEECCHHHHHHHEEEEEECCEEEECCCCEEHHHHHHHHHHCCCCC
QKIALVDAGAGAPQQVLTLIDENSKTKKIIVVDVIDWGIKPGEIKIIEKDELPNPKYHRL
CEEEEEECCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCC
DSHDWPLAPLLREVAEKYNIEVKVVGCQAKYISEPDVYIGLSEEVEKAVDKAVEIILREL
CCCCCCHHHHHHHHHHHHCCEEEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHH
RGD
CCC
>Mature Secondary Structure
MNETMKAEIESQDDELFDLTPSYLKKEIMVLACGNILFADDGFSVHVIEKLNKILTDKEK
CCCCCCCCCCCCCCCEEECCHHHHHHHEEEEEECCEEEECCCCEEHHHHHHHHHHCCCCC
QKIALVDAGAGAPQQVLTLIDENSKTKKIIVVDVIDWGIKPGEIKIIEKDELPNPKYHRL
CEEEEEECCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCC
DSHDWPLAPLLREVAEKYNIEVKVVGCQAKYISEPDVYIGLSEEVEKAVDKAVEIILREL
CCCCCCHHHHHHHHHHHHCCEEEEEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHH
RGD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2; coenzyme F420

Specific reaction: H2 + coenzyme F420 = reduced coenzyme F420

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087