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The map label for this gene is cbiD

Identifier: 15668193

GI number: 15668193

Start: 24003

End: 25091

Strand: Direct

Name: cbiD

Synonym: MJ0022

Alternate gene names: 15668193

Gene position: 24003-25091 (Clockwise)

Preceding gene: 15668192

Following gene: 15668194

Centisome position: 1.44

GC content: 30.39

Gene sequence:

>1089_bases
ATGATTTATGATTTCAGGAAAAAATCAAAATTTGGCTACACTACTGGCTCATGTGCTGCTGCTGGGGCTTATTCTGCATT
ATATTATTTAAAATTTGGAAAAAAACTTAGTTATGTTGAGATTGAGAATTTAAATGGTGATAAATTAATTATTCCAATAG
AAAAAATTGAAAAATGTGGAAATAAAGCTAAAGCAGTGGTTATTAAAGATGCTGGAGGGGATATAGATATAACAAACGGA
ATTGAAATTATTACTGAAGTGGAGTTAAAAAAAGGAAAAAAGGATGTTATTATCAAAGGTGGAGAAGGGGTTGGAATAGT
TACAAAGAATGGCTTGCAGGTAAAGAAAGGAGAGCCAGCTATAAATCCAAAACCAAGAGAGATGATTAGAAACAACCTTT
TAAAATTGTTAAATGATGATGAAGTTGTAGAGGTAACAATCTCTATCCCAAAAGGAAAAGAACTTGCTAAAAAAACACTA
AATCCAAAACTTGGAATTGTTGGTGGATTATCTATATTGGGAACAACTGGAATTGTTAGACCAATGTCAAATGAAGCATA
TATGAACTCTTTAGCTCCACAAATAGATGTTGCATTAGCAAATGGCTATAAGAGATTAATTTTTGTTCCTGGAAATATTG
GAACTAAATATGCTAAACAACTTTTAAATGCTAATGATGATGAGATTATTGAGGTTTCAAACTTTTGGGGATTTATGCTT
GATAAAGCTAAAGAAAAAGGTGTTGAGGAGATTTTAATCTTTGGACATGCTGGAAAAATAATTAAGTTGGCGGGGGGGAT
ATATAATACTCATTCAAAGGTAGCTGATTGTAGAAATGAGATATTAGCAGCTTATTCGTCTCTATTTATTGATGACAAAG
AGGCGATAAAAAAAATTTTATATTCAAATACAACAGAGGAAGTTATTAAAATTTTAGAGGAAAAAGGAGTTTTAAATGAT
GTGTTCAATTTTATAGCTAAAAGAGTTGTTGAAAGGTTAAGTGAAAGATGGAAGGGTATAAAATTCAGCTGTATAATTAT
AAATATGAAAGGGGAGGTTTTAGGAAGTTATATATGGAATAAAAAATAA

Upstream 100 bases:

>100_bases
TTATTAAAATTACTAAGGTTATTTGAACGCCAAAGGCGTTCATTTCTTCATTAATACTCAAAATGTTTTGCAAAAAACTA
TAAAAAGATAATGGGAGATT

Downstream 100 bases:

>100_bases
TTAAACATTAACAATGAACACAAAAAAGTAATCTTGAAGAATGTAGGGGTATTATGACAGTTGCCTATGCTAAGTTGTAT
GAGATTATTCATAAAAATGT

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MIYDFRKKSKFGYTTGSCAAAGAYSALYYLKFGKKLSYVEIENLNGDKLIIPIEKIEKCGNKAKAVVIKDAGGDIDITNG
IEIITEVELKKGKKDVIIKGGEGVGIVTKNGLQVKKGEPAINPKPREMIRNNLLKLLNDDEVVEVTISIPKGKELAKKTL
NPKLGIVGGLSILGTTGIVRPMSNEAYMNSLAPQIDVALANGYKRLIFVPGNIGTKYAKQLLNANDDEIIEVSNFWGFML
DKAKEKGVEEILIFGHAGKIIKLAGGIYNTHSKVADCRNEILAAYSSLFIDDKEAIKKILYSNTTEEVIKILEEKGVLND
VFNFIAKRVVERLSERWKGIKFSCIIINMKGEVLGSYIWNKK

Sequences:

>Translated_362_residues
MIYDFRKKSKFGYTTGSCAAAGAYSALYYLKFGKKLSYVEIENLNGDKLIIPIEKIEKCGNKAKAVVIKDAGGDIDITNG
IEIITEVELKKGKKDVIIKGGEGVGIVTKNGLQVKKGEPAINPKPREMIRNNLLKLLNDDEVVEVTISIPKGKELAKKTL
NPKLGIVGGLSILGTTGIVRPMSNEAYMNSLAPQIDVALANGYKRLIFVPGNIGTKYAKQLLNANDDEIIEVSNFWGFML
DKAKEKGVEEILIFGHAGKIIKLAGGIYNTHSKVADCRNEILAAYSSLFIDDKEAIKKILYSNTTEEVIKILEEKGVLND
VFNFIAKRVVERLSERWKGIKFSCIIINMKGEVLGSYIWNKK
>Mature_362_residues
MIYDFRKKSKFGYTTGSCAAAGAYSALYYLKFGKKLSYVEIENLNGDKLIIPIEKIEKCGNKAKAVVIKDAGGDIDITNG
IEIITEVELKKGKKDVIIKGGEGVGIVTKNGLQVKKGEPAINPKPREMIRNNLLKLLNDDEVVEVTISIPKGKELAKKTL
NPKLGIVGGLSILGTTGIVRPMSNEAYMNSLAPQIDVALANGYKRLIFVPGNIGTKYAKQLLNANDDEIIEVSNFWGFML
DKAKEKGVEEILIFGHAGKIIKLAGGIYNTHSKVADCRNEILAAYSSLFIDDKEAIKKILYSNTTEEVIKILEEKGVLND
VFNFIAKRVVERLSERWKGIKFSCIIINMKGEVLGSYIWNKK

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_METJA (Q60342)

Other databases:

- EMBL:   L77117
- PIR:   F64302
- RefSeq:   NP_246985.1
- ProteinModelPortal:   Q60342
- SMR:   Q60342
- GeneID:   1450860
- GenomeReviews:   L77117_GR
- KEGG:   mja:MJ_0022
- NMPDR:   fig|243232.1.peg.22
- TIGR:   MJ0022
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   MJAN243232:MJ_0022-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 39951; Mature: 39951

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYDFRKKSKFGYTTGSCAAAGAYSALYYLKFGKKLSYVEIENLNGDKLIIPIEKIEKCG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHEEHHCCEEEEEEEECCCCCEEEEEHHHHHHCC
NKAKAVVIKDAGGDIDITNGIEIITEVELKKGKKDVIIKGGEGVGIVTKNGLQVKKGEPA
CCEEEEEEEECCCCEEECCCEEEEEEEEHHCCCCEEEEECCCEEEEEECCCEEEECCCCC
INPKPREMIRNNLLKLLNDDEVVEVTISIPKGKELAKKTLNPKLGIVGGLSILGTTGIVR
CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEECHHHHCCCCCCC
PMSNEAYMNSLAPQIDVALANGYKRLIFVPGNIGTKYAKQLLNANDDEIIEVSNFWGFML
CCCCHHHHHHCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEHHHHHHHH
DKAKEKGVEEILIFGHAGKIIKLAGGIYNTHSKVADCRNEILAAYSSLFIDDKEAIKKIL
HHHHHCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YSNTTEEVIKILEEKGVLNDVFNFIAKRVVERLSERWKGIKFSCIIINMKGEVLGSYIWN
HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHCC
KK
CC
>Mature Secondary Structure
MIYDFRKKSKFGYTTGSCAAAGAYSALYYLKFGKKLSYVEIENLNGDKLIIPIEKIEKCG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHEEHHCCEEEEEEEECCCCCEEEEEHHHHHHCC
NKAKAVVIKDAGGDIDITNGIEIITEVELKKGKKDVIIKGGEGVGIVTKNGLQVKKGEPA
CCEEEEEEEECCCCEEECCCEEEEEEEEHHCCCCEEEEECCCEEEEEECCCEEEECCCCC
INPKPREMIRNNLLKLLNDDEVVEVTISIPKGKELAKKTLNPKLGIVGGLSILGTTGIVR
CCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEECHHHHCCCCCCC
PMSNEAYMNSLAPQIDVALANGYKRLIFVPGNIGTKYAKQLLNANDDEIIEVSNFWGFML
CCCCHHHHHHCCCCEEEEEECCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEHHHHHHHH
DKAKEKGVEEILIFGHAGKIIKLAGGIYNTHSKVADCRNEILAAYSSLFIDDKEAIKKIL
HHHHHCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
YSNTTEEVIKILEEKGVLNDVFNFIAKRVVERLSERWKGIKFSCIIINMKGEVLGSYIWN
HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHCC
KK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087