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The map label for this gene is dod

Identifier: 30995386

GI number: 30995386

Start: 584755

End: 585429

Strand: Reverse

Name: dod

Synonym: HI0566

Alternate gene names: 30995386

Gene position: 585429-584755 (Counterclockwise)

Preceding gene: 16272510

Following gene: 16272508

Centisome position: 31.99

GC content: 41.19

Gene sequence:

>675_bases
ATGAAACCTTATCTTATCGCCCCATCAATTCTTTCTGCCGATCTTGCACGTCTTGGCGATGACGTACAAAACGTACTTAA
TGCAGGCGCGGATGTTATTCATTTTGATGTTATGGATAATCATTATGTACCTAATCTCACTTTTGGGCCTGCGGTATGTC
AGGCTTTACGTGATTATGGCATTACCGCACCGATAGATGTGCATTTAATGGTAAAACCCGTCGATCGCATTATTCCCGAT
TTTGCTAAAGCGGGTGCGAACTACATCACTTTTCACCCAGAATCTAGCGAACATATTGACCGCTCTTTGCAGCTTATTCG
CGATTGTGGTTGTAAATCTGGATTAGTTTTTAATCCTGCGATGCCGTTGAGCTATTTAGATTATGTTTTGGATAAAGTGG
ATGTGGTTTTATTAATGTCAGTGAATCCTGGATTTGGCGGACAATCTTTTATTCCAGCAACATTGAAGAAATTACAACAG
GCTCGTAAGATCATTGATGAAAGTGGTTATGACATTCGTCTTGAAGTAGATGGTGGCGTGAAGGTTGATAACATCGCAGA
AATTGCCGCGGCGGGTGCAGATATGTTCGTGGCAGGTTCTGCAATTTTTGGTAAGCCAGATTATAAACAAGTTATTGACC
AAATACGTACACAGTTAGCAAGTGTTAGCGCATAA

Upstream 100 bases:

>100_bases
TTTCTTTGTTTATCTTGTTATTTCATATAAGGATTACTGTTGGTTTTTTGACGTTAAGTGAGTAAACTAAATGCACTCAT
TTTCTCAACGGAGAACCTTT

Downstream 100 bases:

>100_bases
CTGTTATTTTAATAAAACACGATCGTAATAGAACAGAGAAAAACAATGAACACACAATTTAAACTTATTGGCTTTGATTT
AGATGGCACCTTGGTAAATA

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRTQLASVSA

Sequences:

>Translated_224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRTQLASVSA
>Mature_224_residues
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPD
FAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQ
ARKIIDESGYDIRLEVDGGVKVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRTQLASVSA

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family

Homologues:

Organism=Homo sapiens, GI40385883, Length=213, Percent_Identity=40.8450704225352, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI219879828, Length=213, Percent_Identity=39.4366197183099, Blast_Score=150, Evalue=6e-37,
Organism=Homo sapiens, GI24307923, Length=169, Percent_Identity=33.7278106508876, Blast_Score=95, Evalue=6e-20,
Organism=Escherichia coli, GI1789788, Length=223, Percent_Identity=78.47533632287, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1790523, Length=210, Percent_Identity=35.7142857142857, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1790754, Length=213, Percent_Identity=30.0469483568075, Blast_Score=103, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17552948, Length=221, Percent_Identity=38.9140271493213, Blast_Score=148, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6322341, Length=233, Percent_Identity=35.1931330472103, Blast_Score=147, Evalue=2e-36,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=41.7061611374408, Blast_Score=161, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPE_HAEIN (P44756)

Other databases:

- EMBL:   L42023
- PIR:   I64077
- RefSeq:   NP_438723.2
- ProteinModelPortal:   P44756
- SMR:   P44756
- GeneID:   949612
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0566
- NMPDR:   fig|71421.1.peg.536
- TIGR:   HI_0566
- HOGENOM:   HBG571751
- OMA:   HIDRTLQ
- ProtClustDB:   PRK05581
- BioCyc:   HINF71421:HI_0566-MONOMER
- BRENDA:   5.1.3.1
- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR11749
- PIRSF:   PIRSF001461
- TIGRFAMs:   TIGR01163

Pfam domain/function: PF00834 Ribul_P_3_epim; SSF51366 RibP_bind_barrel

EC number: =5.1.3.1

Molecular weight: Translated: 24276; Mature: 24276

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYG
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPA
CCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
MPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGV
CCHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRTQLASVSA
CHHHHHHHHHCCCCCEEECCEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPYLIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYG
CCCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC
ITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSEHIDRSLQLIRDCGCKSGLVFNPA
CCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCC
MPLSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGV
CCHHHHHHHHHHHCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
KVDNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRTQLASVSA
CHHHHHHHHHCCCCCEEECCEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800