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The map label for this gene is ccmH

Identifier: 16273643

GI number: 16273643

Start: 1159701

End: 1160618

Strand: Direct

Name: ccmH

Synonym: HI1097m

Alternate gene names: 16273643

Gene position: 1159701-1160618 (Clockwise)

Preceding gene: 16273642

Following gene: 16273024

Centisome position: 63.37

GC content: 36.17

Gene sequence:

>918_bases
ATGAATTTTACATTAATTTTTATCTTAACCACTTTAGTTGTGGCGTTAATTTGTTTTTATCCTTTATTATGTCAATTCAA
AGCGAAACATGGGCAAAAACGTGATGATTTAAATAAGGCGTTATATTTCTCGCGCTTGGAAGAAATTGAGCAAGATAATT
CCCAAGGTTTAGTTGAAAATGTTGAGCAACTTAAACAAGAATTACAGAAAACCTTGCTTGATGATGTGCCGAGCAAGGTT
CAAGAGAATGTGGATTATTCTGGCAAATCTTATGGAAAAATTTGGTTTATCTCTGGTGTATTAGCGTTAGGAATTATCGC
AGGTCCTTCTTATTTTATGGTGGGATCTTGGCAAGCCGAATCAATGTTAGAGCAAACTTATGCGAAATTGCCCTATTTCT
TTGACCGAATGAAAAATGAAGATAAAAATCCATTTTCTGATACAGAAATGCAGCAATTTTCTACCGCACTTCGAATCGAT
TTGCAAAAAAATCCAACTGATGCCAAAAAATGGTGGATGCTCGGTCAAATTGGGATGAATTTAGGTGATGCACGTTTGGC
ATTCGATAGCTATCAAAAGGCTAATAAACTTGAACCAGATAATGTGCAATATAAATTAGGCTATGCGCGTATATTGATGT
TTTCTGAAGATGCGACTGATAAACTTAAAGGTGGCAATTTATTGCGTGAAGTGATTCGTCAAGAACACACTAACATTGAA
GCATTGAGTTTACTCGCATTCCGTTATTTTGAAACGGAAGATTATAAAATGGCGGCAGTGACTTGGGCGATGATGCTACG
CTTAATGCCGAAAGATGATGAGCGTGTTCCTCTAATTGAAAAAAGTATTCGTACCGCGCGTGATGCTTTAGAAGCGCAAA
ATGAAGAAAAATCAAAAAGTATCACTCCCGAAAAATAA

Upstream 100 bases:

>100_bases
AAGACGCAAACCTAAAACCCAAAGTGCGGTGAAATCCCAAGAGATTTTAACGGATGAAGATAATGCACGTTTGGCAGAAT
TATTAAACAAGGATAAATAG

Downstream 100 bases:

>100_bases
CCTAGTACGTTATAAGACTTTTTGATATAGTGCGAAAAAATTATTCGTAGTCGAACAGATTAGCATTTAATAAAGTACTA
AAGGAACGAGAAATGAATAA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MNFTLIFILTTLVVALICFYPLLCQFKAKHGQKRDDLNKALYFSRLEEIEQDNSQGLVENVEQLKQELQKTLLDDVPSKV
QENVDYSGKSYGKIWFISGVLALGIIAGPSYFMVGSWQAESMLEQTYAKLPYFFDRMKNEDKNPFSDTEMQQFSTALRID
LQKNPTDAKKWWMLGQIGMNLGDARLAFDSYQKANKLEPDNVQYKLGYARILMFSEDATDKLKGGNLLREVIRQEHTNIE
ALSLLAFRYFETEDYKMAAVTWAMMLRLMPKDDERVPLIEKSIRTARDALEAQNEEKSKSITPEK

Sequences:

>Translated_305_residues
MNFTLIFILTTLVVALICFYPLLCQFKAKHGQKRDDLNKALYFSRLEEIEQDNSQGLVENVEQLKQELQKTLLDDVPSKV
QENVDYSGKSYGKIWFISGVLALGIIAGPSYFMVGSWQAESMLEQTYAKLPYFFDRMKNEDKNPFSDTEMQQFSTALRID
LQKNPTDAKKWWMLGQIGMNLGDARLAFDSYQKANKLEPDNVQYKLGYARILMFSEDATDKLKGGNLLREVIRQEHTNIE
ALSLLAFRYFETEDYKMAAVTWAMMLRLMPKDDERVPLIEKSIRTARDALEAQNEEKSKSITPEK
>Mature_305_residues
MNFTLIFILTTLVVALICFYPLLCQFKAKHGQKRDDLNKALYFSRLEEIEQDNSQGLVENVEQLKQELQKTLLDDVPSKV
QENVDYSGKSYGKIWFISGVLALGIIAGPSYFMVGSWQAESMLEQTYAKLPYFFDRMKNEDKNPFSDTEMQQFSTALRID
LQKNPTDAKKWWMLGQIGMNLGDARLAFDSYQKANKLEPDNVQYKLGYARILMFSEDATDKLKGGNLLREVIRQEHTNIE
ALSLLAFRYFETEDYKMAAVTWAMMLRLMPKDDERVPLIEKSIRTARDALEAQNEEKSKSITPEK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats

Homologues:

Organism=Escherichia coli, GI1788522, Length=217, Percent_Identity=38.2488479262673, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCMH_HAEIN (P46458)

Other databases:

- EMBL:   L42023
- ProteinModelPortal:   P46458
- GenomeReviews:   L42023_GR
- TIGR:   HI_1096
- HOGENOM:   HBG417226
- OMA:   AYANAYH
- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10
- TIGRFAMs:   TIGR03142

Pfam domain/function: PF03918 CcmH

EC number: NA

Molecular weight: Translated: 35240; Mature: 35240

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: BINDING 44-44 BINDING 47-47

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFTLIFILTTLVVALICFYPLLCQFKAKHGQKRDDLNKALYFSRLEEIEQDNSQGLVEN
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
VEQLKQELQKTLLDDVPSKVQENVDYSGKSYGKIWFISGVLALGIIAGPSYFMVGSWQAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH
SMLEQTYAKLPYFFDRMKNEDKNPFSDTEMQQFSTALRIDLQKNPTDAKKWWMLGQIGMN
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCC
LGDARLAFDSYQKANKLEPDNVQYKLGYARILMFSEDATDKLKGGNLLREVIRQEHTNIE
CCCHHHHHHHHHHHCCCCCCCCEEEECEEEEEEECCCCHHHHCCCHHHHHHHHHHCCCHH
ALSLLAFRYFETEDYKMAAVTWAMMLRLMPKDDERVPLIEKSIRTARDALEAQNEEKSKS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCC
ITPEK
CCCCC
>Mature Secondary Structure
MNFTLIFILTTLVVALICFYPLLCQFKAKHGQKRDDLNKALYFSRLEEIEQDNSQGLVEN
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHH
VEQLKQELQKTLLDDVPSKVQENVDYSGKSYGKIWFISGVLALGIIAGPSYFMVGSWQAE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH
SMLEQTYAKLPYFFDRMKNEDKNPFSDTEMQQFSTALRIDLQKNPTDAKKWWMLGQIGMN
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCC
LGDARLAFDSYQKANKLEPDNVQYKLGYARILMFSEDATDKLKGGNLLREVIRQEHTNIE
CCCHHHHHHHHHHHCCCCCCCCEEEECEEEEEEECCCCHHHHCCCHHHHHHHHHHCCCHH
ALSLLAFRYFETEDYKMAAVTWAMMLRLMPKDDERVPLIEKSIRTARDALEAQNEEKSKS
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCC
ITPEK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800