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The map label for this gene is ccmH

Identifier: 16273642

GI number: 16273642

Start: 1159239

End: 1159700

Strand: Direct

Name: ccmH

Synonym: HI1096m

Alternate gene names: 16273642

Gene position: 1159239-1159700 (Clockwise)

Preceding gene: 16273023

Following gene: 16273643

Centisome position: 63.34

GC content: 38.31

Gene sequence:

>462_bases
ATGAAAAAAACATGGCTATTTTTGACCGCACTTTTGTTTAGCTCGGTGGCGTTTTCAGCTATTGATGCATTAAATTTTAG
TTCTCCACAGCAAGAGAGTGATTACCATCAATTAACACAATCTTTGCGTTGCCCTCAATGTCAAAATAACAATATTGCGG
ATTCCAATGCGACTATCGCAGTGGATATGCGTGGCAAAGTATTTGAGCTTTTACAAGAAGGCAAATCAAAAAATGACGTA
GTGGATTATATGGTGGCTCGCTATGGCAATTTTGTAACCTATGATCCTCCTATAACAGCGAGTACATTAGTGCTATGGAT
TGCGCCATTATTGCTTGTGTTGTTAGGCGTGGTGTTTTTATTAAGACGCAAACCTAAAACCCAAAGTGCGGTGAAATCCC
AAGAGATTTTAACGGATGAAGATAATGCACGTTTGGCAGAATTATTAAACAAGGATAAATAG

Upstream 100 bases:

>100_bases
GAAAAGGTGTGATTCATTATCGTTATGCTGGAGATGTAAACGAAAAAGTTTGGACTCAGACTTTAAAACCAATTTATGAC
AAACTTTCGGAGCAACAATA

Downstream 100 bases:

>100_bases
ATGAATTTTACATTAATTTTTATCTTAACCACTTTAGTTGTGGCGTTAATTTGTTTTTATCCTTTATTATGTCAATTCAA
AGCGAAACATGGGCAAAAAC

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKKTWLFLTALLFSSVAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDV
VDYMVARYGNFVTYDPPITASTLVLWIAPLLLVLLGVVFLLRRKPKTQSAVKSQEILTDEDNARLAELLNKDK

Sequences:

>Translated_153_residues
MKKTWLFLTALLFSSVAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDV
VDYMVARYGNFVTYDPPITASTLVLWIAPLLLVLLGVVFLLRRKPKTQSAVKSQEILTDEDNARLAELLNKDK
>Mature_153_residues
MKKTWLFLTALLFSSVAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDV
VDYMVARYGNFVTYDPPITASTLVLWIAPLLLVLLGVVFLLRRKPKTQSAVKSQEILTDEDNARLAELLNKDK

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats

Homologues:

Organism=Escherichia coli, GI1788522, Length=106, Percent_Identity=58.4905660377358, Blast_Score=145, Evalue=9e-37,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=43.9024390243902, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCMH_HAEIN (P46458)

Other databases:

- EMBL:   L42023
- ProteinModelPortal:   P46458
- GenomeReviews:   L42023_GR
- TIGR:   HI_1096
- HOGENOM:   HBG417226
- OMA:   AYANAYH
- InterPro:   IPR005616
- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734
- Gene3D:   G3DSA:1.25.40.10
- TIGRFAMs:   TIGR03142

Pfam domain/function: PF03918 CcmH

EC number: NA

Molecular weight: Translated: 17183; Mature: 17183

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50005 TPR; PS50293 TPR_REGION

Important sites: BINDING 44-44 BINDING 47-47

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTWLFLTALLFSSVAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
VDMRGKVFELLQEGKSKNDVVDYMVARYGNFVTYDPPITASTLVLWIAPLLLVLLGVVFL
EECCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LRRKPKTQSAVKSQEILTDEDNARLAELLNKDK
HHCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MKKTWLFLTALLFSSVAFSAIDALNFSSPQQESDYHQLTQSLRCPQCQNNNIADSNATIA
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
VDMRGKVFELLQEGKSKNDVVDYMVARYGNFVTYDPPITASTLVLWIAPLLLVLLGVVFL
EECCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LRRKPKTQSAVKSQEILTDEDNARLAELLNKDK
HHCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800