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The map label for this gene is rnfD [H]

Identifier: 16273573

GI number: 16273573

Start: 1756695

End: 1757771

Strand: Direct

Name: rnfD [H]

Synonym: HI1686

Alternate gene names: 16273573

Gene position: 1756695-1757771 (Clockwise)

Preceding gene: 16273572

Following gene: 16273574

Centisome position: 95.99

GC content: 39.28

Gene sequence:

>1077_bases
ATGTTTAAAATGGTTAGCTCCCCACATACTCATTCAGGAAAACTCACAGCGCATATTATGCTTTGGGCCATTTTGGCAAT
GATGCCCGCTTTTTTCACGCAAATTTATTATTTTGGATTTGGCGTGGTGCTTCAATCCGCATTAGCCATTGGTACGGCAA
TCATTGCGGAATTTATTGCAATAAAATTACGAGGTAAAAAACCGCTCAATTATCTTTCAGATTTCAGCGTAGCCCTGACT
GCGTTAATTTTGGCAATGGCTATTCCACCTTATGCACCTTATTGGATTATCATCATTGGAACACTCTGTGCAGTTTTATT
AGGTAAACAGGTTTATGGGGGGTTAGGGCAAAATCCATTCAATCCCGCGATGATTGGCTATGTAATTCTTCTAATTTCAT
TCCCATTACAAATGACAACTTGGATGCCACCAATTAATTTATTACAGGAACCACCGACTTTTTCAGATGCATTTTCATTA
ATATTTTCAGGTTTAACCACTGATGGATTTACGCTTTCACAACTTACGCATAACATTGATGGTATCACCCAAGCAACGCC
TTTGGATAGTGCAAAAATTTTCTATAAAAGTCACACTCAATTAAATGATTTTTATGAGCTAATTAAACTACCTATATTTA
TGGGTAATGGAACTGATTTCGCTCAAGGATGGTGGCAAATCAACGTGGCTTTCTTAGCGGGCGGAATTTTCCTTATTTTA
AAACGTGTCATTCACTGGCAAATTCCAGTGGCGATGCTTGTCACCTTTTTCTGTTTAGCCACTGCGACCGCTTTTACTGG
CTTCACGCATTTAAGTGCGATTAGCCAACTCGTTAGTGGCGCAATGATGTTTGGTGCATTTTTTATTGCAACAGATCCTG
TCACAGCCTCCATTACACCACGCGGAAAAATTATTTTTGGCGCATTAGTGGGGTTATTTGTTTATCTCATTCGTTATCAC
GGAAATTATCCAGACGGCGTGGCATTCGCCATTTTATTAAGTAATATTTGCGTCCCACTTATCGATCATTACACACGTCC
GCGCGTATCTGGTTATCCAACAAAAGGAAGAAAATAA

Upstream 100 bases:

>100_bases
GACCCTAAAAAAGCAGCCGTAGCCGCCGCCATTGCTCGGGCAAAAGCGAAGAAACTGGCAAAAACACAAGCAACATTAGA
AAATAATCAGGAATAAAATA

Downstream 100 bases:

>100_bases
TGGGTACAGTAAAAATCACATCGCGTTATGGCATATTGTTAGGCTTTATTGCCCTACTTTGCACAATAATTTCTGCAGGA
ATTTTCTTCCTAACAAAAGA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MFKMVSSPHTHSGKLTAHIMLWAILAMMPAFFTQIYYFGFGVVLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALT
ALILAMAIPPYAPYWIIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSL
IFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHTQLNDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLIL
KRVIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYH
GNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK

Sequences:

>Translated_358_residues
MFKMVSSPHTHSGKLTAHIMLWAILAMMPAFFTQIYYFGFGVVLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALT
ALILAMAIPPYAPYWIIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSL
IFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHTQLNDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLIL
KRVIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYH
GNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
>Mature_358_residues
MFKMVSSPHTHSGKLTAHIMLWAILAMMPAFFTQIYYFGFGVVLQSALAIGTAIIAEFIAIKLRGKKPLNYLSDFSVALT
ALILAMAIPPYAPYWIIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSL
IFSGLTTDGFTLSQLTHNIDGITQATPLDSAKIFYKSHTQLNDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLIL
KRVIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYH
GNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=353, Percent_Identity=49.5750708215297, Blast_Score=340, Evalue=7e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 39358; Mature: 39358

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKMVSSPHTHSGKLTAHIMLWAILAMMPAFFTQIYYFGFGVVLQSALAIGTAIIAEFIA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWIIIIGTLCAVLLGKQVYGGLGQNPF
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
NPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNID
CHHHHHHHHHHHHCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHC
GITQATPLDSAKIFYKSHTQLNDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLIL
CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHEECCCCCHHCHHHEEEHHHHHHHHHHHH
KRVIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCC
RGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFKMVSSPHTHSGKLTAHIMLWAILAMMPAFFTQIYYFGFGVVLQSALAIGTAIIAEFIA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKLRGKKPLNYLSDFSVALTALILAMAIPPYAPYWIIIIGTLCAVLLGKQVYGGLGQNPF
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
NPAMIGYVILLISFPLQMTTWMPPINLLQEPPTFSDAFSLIFSGLTTDGFTLSQLTHNID
CHHHHHHHHHHHHCCHHHHHCCCCHHHHCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHC
GITQATPLDSAKIFYKSHTQLNDFYELIKLPIFMGNGTDFAQGWWQINVAFLAGGIFLIL
CCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHEECCCCCHHCHHHEEEHHHHHHHHHHHH
KRVIHWQIPVAMLVTFFCLATATAFTGFTHLSAISQLVSGAMMFGAFFIATDPVTASITP
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCC
RGKIIFGALVGLFVYLIRYHGNYPDGVAFAILLSNICVPLIDHYTRPRVSGYPTKGRK
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA