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The map label for this gene is rnfC

Identifier: 16273572

GI number: 16273572

Start: 1754231

End: 1756690

Strand: Direct

Name: rnfC

Synonym: HI1685

Alternate gene names: 16273572

Gene position: 1754231-1756690 (Clockwise)

Preceding gene: 16273571

Following gene: 16273573

Centisome position: 95.85

GC content: 41.67

Gene sequence:

>2460_bases
ATGGCGGACGTATTATCTCGTTTCAATTCCGGTAAATTATGGGATTTCAAAGGTGGCATTCATCCACCAGAAATGAAATC
TCAATCTAATTCACAGCCATTACGCCATCTGCCTCTCGGCACGGATTTTTACATTCCACTCAAACAGCACCTAGGAACAA
CAGGCAATCTTTTAATAAAAGAGGGCGATTACGTCTTAAAAGGACAAGCCTTAACAAAAGGCGATGGCTTGCGTATGTTG
CCAGTTCACGCGCCCACTTCTGGCACAATTAAATCGATTAAACCTTATGTTGCCACGCATCCTTCAGGTCTTGATGAACC
CACAATTCATTTACAGGCGGATGGTTTAGATCAATGGATCGAACGTAATCCTATTGATGATTTTTCAACGCTATCGTCAG
AACAACTTATTCACAAAATCTATCAAGCAGGTATAGCAGGTTTAGGCGGTGCAGTATTCCCAACTGCTGCCAAAATTCAG
TCAGCAGAGCAAAAAGTCAAACTCTTAATTATCAATGGTGCAGAATGTGAGCCTTATATCACTTGTGATGATCGTCTTAT
GCGTGAACGTGCTGATGAAATCATAAAAGGCATTCGTATTTTACGTTATATATTGCACCCTGAAAAAGTTGTCATTGCCA
TTGAAGATAACAAACCAGAAGCCATATCGGCAATCCGCAATGCACTACAGGGAGCAAATGATATTAGCATTCGGGTTATT
CCAACAAAATATCCTTCAGGTGCTACCAAACAACTGATTTATTTGCTCACAGGGATAGAAGTGCCAAGTGGTGAGCGTTC
ATCCAGCATTGGCGTATTAATGCAAAATGTGGGAACAATGTTCGCAATAAAAAGAGCAATTATAAATGACGAGCCTTTAA
TTGAGCGTGTTGTCACCCTTACTGGAAATAAAATCGCTGAAAAAGGCAATTATTGGGTGCGTCTTGGCACACCCATTTCC
CAAATATTGAGCGATGCGGGCTATCAATTTGACAAGCATTTTCCTATATTTGCAGGTGGGCCAATGATGGGGCTAGAGCT
TCCAAACCTAAATGCACCTGTGACAAAACTTGTCAATTGTTTACTTGCGCCAGATTATCTTGAATATGCCGAACCTGAAG
CAGAACAGGCTTGTATTCGTTGTTCTAGCTGTTCTGATGCCTGCCCAGTAAATTTAATGCCACAACAACTTTATTGGTTT
GCGCGCAGTGAAGATCACAAAAAATCGGAAGAATACGCTCTCAAAGATTGTATTGAATGTGGAATTTGCGCATACGTATG
CCCAAGCCATATTCCTCTAATTCAATATTTCCGCCAAGAAAAAGCTAAAATCTGGCAAATAAAAGAAAAACAAAAGAAAT
CAGATGAAGCCAAAATTCGCTTTGAAGCAAAACAAGCACGGATGGAACGTGAAGAACAAGAGCGTAAAGCGCGTTCACAA
CGTGCAGCACAGGCTCGCCGTGAAGAATTAGCACAAACTAAAGGGGAAGATCCAGTCAAGGCGGCACTCGAACGCTTGAA
AGCGAAAAAAGCCAATGAAACAGAATCAACGCAGATTAAAACACTAACCTCAGAAAAAGGAGAAGTTTTACCTGATAACA
CAGATTTAATGGCACAACGTAAGGCACGCCGTTTAGCTCGTCAGCAAGCAGCATCTCAAGTCGAAAATCAAGAACAACAA
ACTCAGCCAACCAATGCGAAAAAAGCAGCAGTTGCAGCCGCACTTGCTCGTGCAAAAGCAAAAAAACTTGCACAAGCAAA
TAGCACCAGCGAAGCTATTTCAAACTCTCAAACCGCAGAAAATCAAGTAGAAAAAACAAAAAGTGCGGTAGAAAAAACAC
AAGAAAATTCAACCGCACTTGATCCTAAAAAAGCAGCCGTAGCCGCCGCCATTGCTCGAGCAAAGGCAAAAAAACTTGCA
CAAACAAATAGCACCAGCGAAGCTATTTCAAACTCTCAAACCGCAGAAAATGAAGTAGAAAAAACAAAAAGTGCGGTAGA
AAAAACAGAAGAAAATTCAACCGCACTTGATGCGAAAAAAGCAGCCATAGCCGCCGCCATTGCTCGGGCGAAAGCAAAAA
AACTTGCACAAGCAAATAGCGCCAGCGAAGCTATTTCAAACTCTCAAACCGCAGAAAATGAAGTAGAAAAAACAAAAAGT
GCGGTAGAAAAAACACAACAAAATTCAACCGCACTTGACCCTAAAAAAGCAGCCGTAGCCGCCGCCATTGCTCGGGCAAA
AGCAAAAAAACTTGCGCAAGCAAATAGCACCAGCGAAGCTATTTCAAACTCTCAAACCGCAGAAAATGAAGTAGAAAAAA
CAAAAAGTGCGGTAGAAAAAACACAAGAAAATTCAACCGCACTTGACCCTAAAAAAGCAGCCGTAGCCGCCGCCATTGCT
CGGGCAAAAGCGAAGAAACTGGCAAAAACACAAGCAACATTAGAAAATAATCAGGAATAA

Upstream 100 bases:

>100_bases
AAAAAATATTGATAATTGGGATTGGAAATTTGATGCAAAACTCGTTATTCCAGTAATGAATGTCGATGGCTCTGAAAAAA
AATTGGTTGTGGGGGAATAA

Downstream 100 bases:

>100_bases
AATAATGTTTAAAATGGTTAGCTCCCCACATACTCATTCAGGAAAACTCACAGCGCATATTATGCTTTGGGCCATTTTGG
CAATGATGCCCGCTTTTTTC

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 819; Mature: 818

Protein sequence:

>819_residues
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRML
PVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQ
SAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISIRVI
PTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAIINDEPLIERVVTLTGNKIAEKGNYWVRLGTPIS
QILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWF
ARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQ
RAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQ
TQPTNAKKAAVAAALARAKAKKLAQANSTSEAISNSQTAENQVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLA
QTNSTSEAISNSQTAENEVEKTKSAVEKTEENSTALDAKKAAIAAAIARAKAKKLAQANSASEAISNSQTAENEVEKTKS
AVEKTQQNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIA
RAKAKKLAKTQATLENNQE

Sequences:

>Translated_819_residues
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRML
PVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQ
SAEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISIRVI
PTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAIINDEPLIERVVTLTGNKIAEKGNYWVRLGTPIS
QILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWF
ARSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQ
RAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQ
TQPTNAKKAAVAAALARAKAKKLAQANSTSEAISNSQTAENQVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLA
QTNSTSEAISNSQTAENEVEKTKSAVEKTEENSTALDAKKAAIAAAIARAKAKKLAQANSASEAISNSQTAENEVEKTKS
AVEKTQQNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIA
RAKAKKLAKTQATLENNQE
>Mature_818_residues
ADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIKEGDYVLKGQALTKGDGLRMLP
VHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQS
AEQKVKLLIINGAECEPYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISIRVIP
TKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAIINDEPLIERVVTLTGNKIAEKGNYWVRLGTPISQ
ILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFA
RSEDHKKSEEYALKDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQR
AAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQRKARRLARQQAASQVENQEQQT
QPTNAKKAAVAAALARAKAKKLAQANSTSEAISNSQTAENQVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAQ
TNSTSEAISNSQTAENEVEKTKSAVEKTEENSTALDAKKAAIAAAIARAKAKKLAQANSASEAISNSQTAENEVEKTKSA
VEKTQQNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTALDPKKAAVAAAIAR
AKAKKLAKTQATLENNQE

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787916, Length=593, Percent_Identity=53.6256323777403, Blast_Score=634, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFC_HAEIN (P71397)

Other databases:

- EMBL:   L42023
- PIR:   E64136
- RefSeq:   NP_439827.1
- ProteinModelPortal:   P71397
- GeneID:   950866
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1685
- NMPDR:   fig|71421.1.peg.1598
- TIGR:   HI_1685
- HOGENOM:   HBG537098
- OMA:   PQQLFWH
- ProtClustDB:   PRK05035
- BioCyc:   HINF71421:HI_1685-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00461
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR01945

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB; SSF46548 Helical_ferredxn

EC number: NA

Molecular weight: Translated: 89284; Mature: 89153

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIK
CCHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCEEEE
EGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWI
CCCEEEECCEEECCCCEEEEEECCCCCCCHHHCCCHHHCCCCCCCCCEEEEEECCHHHHH
ERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYI
HCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEE
TCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISIRVI
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEE
PTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAIINDEPLIERVVTL
ECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
TGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNC
CCCHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHH
LLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIEC
HHCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
GICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQ
CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHH
RAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCCCHHHHHHH
KARRLARQQAASQVENQEQQTQPTNAKKAAVAAALARAKAKKLAQANSTSEAISNSQTAE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHH
NQVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAQTNSTSEAISNSQTAENEVE
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
KTKSAVEKTEENSTALDAKKAAIAAAIARAKAKKLAQANSASEAISNSQTAENEVEKTKS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHH
AVEKTQQNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEK
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHH
TQENSTALDPKKAAVAAAIARAKAKKLAKTQATLENNQE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLLIK
CHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCCCCCEEEE
EGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQWI
CCCEEEECCEEECCCCEEEEEECCCCCCCHHHCCCHHHCCCCCCCCCEEEEEECCHHHHH
ERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQSAEQKVKLLIINGAECEPYI
HCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEE
TCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIRNALQGANDISIRVI
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEE
PTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAIINDEPLIERVVTL
ECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
TGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFPIFAGGPMMGLELPNLNAPVTKLVNC
CCCHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHH
LLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYALKDCIEC
HHCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
GICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQERKARSQ
CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHH
RAAQARREELAQTKGEDPVKAALERLKAKKANETESTQIKTLTSEKGEVLPDNTDLMAQR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHEEEECCCCCCCCCCCHHHHHHH
KARRLARQQAASQVENQEQQTQPTNAKKAAVAAALARAKAKKLAQANSTSEAISNSQTAE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHH
NQVEKTKSAVEKTQENSTALDPKKAAVAAAIARAKAKKLAQTNSTSEAISNSQTAENEVE
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHH
KTKSAVEKTEENSTALDAKKAAIAAAIARAKAKKLAQANSASEAISNSQTAENEVEKTKS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHH
AVEKTQQNSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEK
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHH
TQENSTALDPKKAAVAAAIARAKAKKLAKTQATLENNQE
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800