Click here to switch to the map view.

The map label for this gene is licD

Identifier: 16273440

GI number: 16273440

Start: 1611159

End: 1611956

Strand: Direct

Name: licD

Synonym: HI1540

Alternate gene names: 16273440

Gene position: 1611159-1611956 (Clockwise)

Preceding gene: 16273439

Following gene: 16273442

Centisome position: 88.03

GC content: 34.46

Gene sequence:

>798_bases
ATGAAAAAATTGACTCTCAGAGAACAACAACTCGTTTGTCTAAACATCTTAGATTATTTCCACGCACTGTGTGAACGATA
TAAAATTAGCTATTCTCTCGGTGGTGGAACATTAATCGGTGCTATACGCCACAAAGGCTTTATCCCTTGGGATGATGATA
TTGATGTTTATATGCACCGTGATGAATATCAAAGGTTCGTTGATGTTTGGTTTCAAGAAACTCACGAACACTACAATATG
GAAACGGCGGAAGATATCCTTGCTCAATATACTGGTGAAATGGCAAAAATTTTCGATTGCCGCACTCAAATAACAGATGC
TAAGGGAAGAAAAAGCCCAATGTTTATGGATATATTTATCTATGATGGCGTACCGAATGAACCAAAGATCATCTATCCAC
TGATGAAAAAGCATCGAAGAATTAAACTTCGCTTTTCCTCTTGCAAAAAAAGATGGTTAAGGGCAAAAGAAAACACCGTG
CAAAAAGCTATACTTAATAAATTAAGCCACTTTCTATTTTCCAAAATGCAAAAAAATTTAGCACAATTCCAAATAAAATA
TCCGATAAAACAATGCGATTATATTGGTCTTGTATTATCTGACTACGGTGGTTGGCAAAAATCTTATATGCCGAAGGAAT
ATTTTAACCATGTTATTTATAAAGAATTTGAAGGACGACAATTTCAAGTAATGAATGGATATCACGAACACTTAACACAA
TATTATGGAGATTATATGAAGCTTCCACCAGAAGAAGACCAAAAGCCACATCATATTCAAGAAGCGTATATTTTGTAA

Upstream 100 bases:

>100_bases
TCTATACGGAACAACTTAACAGTGATGATATATTTGAAATGGATAACCTTGATGACTATCACCACATTTTACAAAAATTG
ACACCAAACAAGGAAAAATA

Downstream 100 bases:

>100_bases
GCGAAAGGGCAGATTTAATTCTGCCCTTTTTCAATTATTACTTCACTTTTCCACAATTCAAACAATACAAATACTGACCT
TTAGGATCATTAAATTTAGT

Product: lic-1 operon protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKKLTLREQQLVCLNILDYFHALCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDVYMHRDEYQRFVDVWFQETHEHYNM
ETAEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFIYDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTV
QKAILNKLSHFLFSKMQKNLAQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGYHEHLTQ
YYGDYMKLPPEEDQKPHHIQEAYIL

Sequences:

>Translated_265_residues
MKKLTLREQQLVCLNILDYFHALCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDVYMHRDEYQRFVDVWFQETHEHYNM
ETAEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFIYDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTV
QKAILNKLSHFLFSKMQKNLAQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGYHEHLTQ
YYGDYMKLPPEEDQKPHHIQEAYIL
>Mature_265_residues
MKKLTLREQQLVCLNILDYFHALCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDVYMHRDEYQRFVDVWFQETHEHYNM
ETAEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFIYDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTV
QKAILNKLSHFLFSKMQKNLAQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGYHEHLTQ
YYGDYMKLPPEEDQKPHHIQEAYIL

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS)

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LICD_HAEIN (P14184)

Other databases:

- EMBL:   M27280
- EMBL:   L42023
- PIR:   D33465
- PIR:   E64128
- RefSeq:   NP_439689.1
- GeneID:   950403
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1540
- NMPDR:   fig|71421.1.peg.1467
- TIGR:   HI_1540
- HOGENOM:   HBG495239
- OMA:   KLRFSSC
- ProtClustDB:   CLSK808536
- BioCyc:   HINF71421:HI_1540-MONOMER
- InterPro:   IPR007074

Pfam domain/function: PF04991 LicD

EC number: NA

Molecular weight: Translated: 31873; Mature: 31873

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTLREQQLVCLNILDYFHALCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDVYMHR
CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEH
DEYQRFVDVWFQETHEHYNMETAEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
YDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTVQKAILNKLSHFLFSKMQKNL
ECCCCCCCCEEHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGYHEHLTQ
HHEEEECCHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHH
YYGDYMKLPPEEDQKPHHIQEAYIL
HHHHHCCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MKKLTLREQQLVCLNILDYFHALCERYKISYSLGGGTLIGAIRHKGFIPWDDDIDVYMHR
CCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEH
DEYQRFVDVWFQETHEHYNMETAEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
YDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTVQKAILNKLSHFLFSKMQKNL
ECCCCCCCCEEHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGYHEHLTQ
HHEEEECCHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHH
YYGDYMKLPPEEDQKPHHIQEAYIL
HHHHHCCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893