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The map label for this gene is licC

Identifier: 16273439

GI number: 16273439

Start: 1610458

End: 1611159

Strand: Direct

Name: licC

Synonym: HI1539

Alternate gene names: 16273439

Gene position: 1610458-1611159 (Clockwise)

Preceding gene: 16273438

Following gene: 16273440

Centisome position: 88.0

GC content: 33.62

Gene sequence:

>702_bases
ATGAATGCAATCATTTTAGCAGCAGGATTAGGCAGCCGATTTAAAGACATCACACAAAGCACACATAAATCATTGTTAGA
TATTCACGGCACACCTAACTTAGAACGGACACTCACTTTTCTACGTCAAGCAAATATCGACAATATTGTCATTGTTACAG
GGTATTTACACGAACAATTCGAGTATCTAAAGAAAAAATATGACTGCACCTTGATTTACAACGAAAAATATCGCGAATAT
AACAGCATTTATTCCTTTTCTCTGGCGCAAGACTTCTTTAATGATTGTTATGTTATTGATGCGGATGTAGTGCTTAATCG
TAATATTTTTCTAACGAAACCATCACACAGCAAATATTTCACAGTTATTCGTTCTAAAACGCACAATGAATGGCTACCGA
TTTTAAATAGTAATGGACAAGTAATACGTATTGATATTGGTTCACTGAATCAACCCAGTTTGTCAGGAATATCATTCTGG
ACTACACAGGATTGCAATATCATTCTAACTTTGCTCAAAGAATACACAAGTGAAGTGCGGTTAAAAAATCCAAAACTTTA
TTGGGATACCATTCCGATGGAATATATAGAGAAATTGAATATCTATACGGAACAACTTAACAGTGATGATATATTTGAAA
TGGATAACCTTGATGACTATCACCACATTTTACAAAAATTGACACCAAACAAGGAAAAATAA

Upstream 100 bases:

>100_bases
ATCTGCTCTATAAACAGCCAATTAAGCCCATTACCTTACTGCTCACCTTATTATTAAGTGCAGGAGTGATCGTTACACTT
TATTACAAAGGGGAACAAAA

Downstream 100 bases:

>100_bases
TGAAAAAATTGACTCTCAGAGAACAACAACTCGTTTGTCTAAACATCTTAGATTATTTCCACGCACTGTGTGAACGATAT
AAAATTAGCTATTCTCTCGG

Product: lic-1 operon protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLTFLRQANIDNIVIVTGYLHEQFEYLKKKYDCTLIYNEKYREY
NSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYFTVIRSKTHNEWLPILNSNGQVIRIDIGSLNQPSLSGISFW
TTQDCNIILTLLKEYTSEVRLKNPKLYWDTIPMEYIEKLNIYTEQLNSDDIFEMDNLDDYHHILQKLTPNKEK

Sequences:

>Translated_233_residues
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLTFLRQANIDNIVIVTGYLHEQFEYLKKKYDCTLIYNEKYREY
NSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYFTVIRSKTHNEWLPILNSNGQVIRIDIGSLNQPSLSGISFW
TTQDCNIILTLLKEYTSEVRLKNPKLYWDTIPMEYIEKLNIYTEQLNSDDIFEMDNLDDYHHILQKLTPNKEK
>Mature_233_residues
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLTFLRQANIDNIVIVTGYLHEQFEYLKKKYDCTLIYNEKYREY
NSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYFTVIRSKTHNEWLPILNSNGQVIRIDIGSLNQPSLSGISFW
TTQDCNIILTLLKEYTSEVRLKNPKLYWDTIPMEYIEKLNIYTEQLNSDDIFEMDNLDDYHHILQKLTPNKEK

Specific function: Unknown

COG id: COG4750

COG function: function code M; CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LICC_HAEIN (P14183)

Other databases:

- EMBL:   M27280
- EMBL:   L42023
- PIR:   C33465
- PIR:   D64128
- RefSeq:   NP_439688.1
- ProteinModelPortal:   P14183
- SMR:   P14183
- GeneID:   950402
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1539
- NMPDR:   fig|71421.1.peg.1466
- TIGR:   HI_1539
- HOGENOM:   HBG343761
- OMA:   REYNSIY
- ProtClustDB:   CLSK2502652
- BioCyc:   HINF71421:HI_1539-MONOMER
- InterPro:   IPR017189
- InterPro:   IPR005835
- PIRSF:   PIRSF037382

Pfam domain/function: PF00483 NTP_transferase

EC number: NA

Molecular weight: Translated: 27319; Mature: 27319

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLTFLRQANIDNIVIVTGYLHEQF
CCEEEEECCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHH
EYLKKKYDCTLIYNEKYREYNSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYF
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCEEEECCCCCEEE
TVIRSKTHNEWLPILNSNGQVIRIDIGSLNQPSLSGISFWTTQDCNIILTLLKEYTSEVR
EEEECCCCCCCCCEECCCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHE
LKNPKLYWDTIPMEYIEKLNIYTEQLNSDDIFEMDNLDDYHHILQKLTPNKEK
ECCCEEEEECCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLTFLRQANIDNIVIVTGYLHEQF
CCEEEEECCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHH
EYLKKKYDCTLIYNEKYREYNSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYF
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCEEEECCCCCEEE
TVIRSKTHNEWLPILNSNGQVIRIDIGSLNQPSLSGISFWTTQDCNIILTLLKEYTSEVR
EEEECCCCCCCCCEECCCCCEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHE
LKNPKLYWDTIPMEYIEKLNIYTEQLNSDDIFEMDNLDDYHHILQKLTPNKEK
ECCCEEEEECCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800