Click here to switch to the map view.

The map label for this gene is licB

Identifier: 16273438

GI number: 16273438

Start: 1609583

End: 1610461

Strand: Direct

Name: licB

Synonym: HI1538

Alternate gene names: 16273438

Gene position: 1609583-1610461 (Clockwise)

Preceding gene: 16273437

Following gene: 16273439

Centisome position: 87.95

GC content: 34.36

Gene sequence:

>879_bases
ATGCGTGGCTATCTCTTTGGCATACTGTCCGCTGTATTTTGGGCATTATCTGGACTGTTGTATAATGAATTGCCATTAAG
TGAATATACTGCGTTAGGGAAAGTGATTTCATTGCTTTTTTTAATTGATTTTTGCTCGTTATTAGTTATCGGCATCACAT
TATGGCGAAAAAGTGCGGTAGATTTTCAAGGTGTTTTTTGGCAACCTGCGTTATCTGGCATATTAGGCGGACCAATAGGA
ATGTCTGCCTATTTATTAAGCATTCATTATTTAACAATCTATTATGCTGCACCGCTTTCATCTCTCTTTCCTGTTTTCGC
TGCGTTAATGTCTTATTGGATTCTAAAAGAAAAAATTACCAAAACAGCCCAATTCGGATTCGCCTTGGCTATTATTTCTT
CTTCGTTGCTTGCTATTGAAGTAGGACAAGAAATAACCTTTAATACTATCGGTTTTATTTTTTTAATAATTTGTATATTA
GGGTGGTCATCTGAAATAGTGATATCCTCCTATACAATGCGTTCTCTCTCTGGACTTCAGGTGTATTTTTTAAGACTATG
TGGTTCAACTATTGGTTATTTATTGATTCTATTTATTCTTTCCTTGAAAAATTTCTCACTAGATATACTTAGTTTTAATT
ATGTACAAATTGCTGGTGTAATAATCTTTGGTGCATTATCTTACTGCTGCTATTACCAAGCGATTTATCTGTTAAAACCA
ATCAAAGCAATGGCATTAAATATCACATATTCTGTATGGGCAATTGGACTTGGTTATCTGCTCTATAAACAGCCAATTAA
GCCCATTACCTTACTGCTCACCTTATTATTAAGTGCAGGAGTGATCGTTACACTTTATTACAAAGGGGAACAAAAATGA

Upstream 100 bases:

>100_bases
TTTTATGGACAAAAGTAAAAGAAGAACACGGCGAGAATTTTGGCGATTATGCGTTAAAACGCTTAGACGCAGCATTTAAA
CTGTTAGAGGAATTGCCATA

Downstream 100 bases:

>100_bases
ATGCAATCATTTTAGCAGCAGGATTAGGCAGCCGATTTAAAGACATCACACAAAGCACACATAAATCATTGTTAGATATT
CACGGCACACCTAACTTAGA

Product: lic-1 operon protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRGYLFGILSAVFWALSGLLYNELPLSEYTALGKVISLLFLIDFCSLLVIGITLWRKSAVDFQGVFWQPALSGILGGPIG
MSAYLLSIHYLTIYYAAPLSSLFPVFAALMSYWILKEKITKTAQFGFALAIISSSLLAIEVGQEITFNTIGFIFLIICIL
GWSSEIVISSYTMRSLSGLQVYFLRLCGSTIGYLLILFILSLKNFSLDILSFNYVQIAGVIIFGALSYCCYYQAIYLLKP
IKAMALNITYSVWAIGLGYLLYKQPIKPITLLLTLLLSAGVIVTLYYKGEQK

Sequences:

>Translated_292_residues
MRGYLFGILSAVFWALSGLLYNELPLSEYTALGKVISLLFLIDFCSLLVIGITLWRKSAVDFQGVFWQPALSGILGGPIG
MSAYLLSIHYLTIYYAAPLSSLFPVFAALMSYWILKEKITKTAQFGFALAIISSSLLAIEVGQEITFNTIGFIFLIICIL
GWSSEIVISSYTMRSLSGLQVYFLRLCGSTIGYLLILFILSLKNFSLDILSFNYVQIAGVIIFGALSYCCYYQAIYLLKP
IKAMALNITYSVWAIGLGYLLYKQPIKPITLLLTLLLSAGVIVTLYYKGEQK
>Mature_292_residues
MRGYLFGILSAVFWALSGLLYNELPLSEYTALGKVISLLFLIDFCSLLVIGITLWRKSAVDFQGVFWQPALSGILGGPIG
MSAYLLSIHYLTIYYAAPLSSLFPVFAALMSYWILKEKITKTAQFGFALAIISSSLLAIEVGQEITFNTIGFIFLIICIL
GWSSEIVISSYTMRSLSGLQVYFLRLCGSTIGYLLILFILSLKNFSLDILSFNYVQIAGVIIFGALSYCCYYQAIYLLKP
IKAMALNITYSVWAIGLGYLLYKQPIKPITLLLTLLLSAGVIVTLYYKGEQK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LICB_HAEIN (P14182)

Other databases:

- EMBL:   M27280
- EMBL:   L42023
- PIR:   B33465
- RefSeq:   NP_439687.1
- GeneID:   950400
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1538
- NMPDR:   fig|71421.1.peg.1465
- TIGR:   HI_1538
- HOGENOM:   HBG495151
- OMA:   WSSEIVI
- ProtClustDB:   CLSK808535
- BioCyc:   HINF71421:HI_1538-MONOMER
- GO:   GO:0016020
- InterPro:   IPR000620

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 32449; Mature: 32449

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGYLFGILSAVFWALSGLLYNELPLSEYTALGKVISLLFLIDFCSLLVIGITLWRKSAV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DFQGVFWQPALSGILGGPIGMSAYLLSIHYLTIYYAAPLSSLFPVFAALMSYWILKEKIT
CCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTAQFGFALAIISSSLLAIEVGQEITFNTIGFIFLIICILGWSSEIVISSYTMRSLSGLQ
HHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHH
VYFLRLCGSTIGYLLILFILSLKNFSLDILSFNYVQIAGVIIFGALSYCCYYQAIYLLKP
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKAMALNITYSVWAIGLGYLLYKQPIKPITLLLTLLLSAGVIVTLYYKGEQK
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCCCC
>Mature Secondary Structure
MRGYLFGILSAVFWALSGLLYNELPLSEYTALGKVISLLFLIDFCSLLVIGITLWRKSAV
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DFQGVFWQPALSGILGGPIGMSAYLLSIHYLTIYYAAPLSSLFPVFAALMSYWILKEKIT
CCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTAQFGFALAIISSSLLAIEVGQEITFNTIGFIFLIICILGWSSEIVISSYTMRSLSGLQ
HHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHH
VYFLRLCGSTIGYLLILFILSLKNFSLDILSFNYVQIAGVIIFGALSYCCYYQAIYLLKP
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKAMALNITYSVWAIGLGYLLYKQPIKPITLLLTLLLSAGVIVTLYYKGEQK
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800