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The map label for this gene is xylR

Identifier: 16273032

GI number: 16273032

Start: 1169854

End: 1171017

Strand: Reverse

Name: xylR

Synonym: HI1106

Alternate gene names: 16273032

Gene position: 1171017-1169854 (Counterclockwise)

Preceding gene: 16273033

Following gene: 16273031

Centisome position: 63.99

GC content: 34.97

Gene sequence:

>1164_bases
ATGACGGAACAATACTACAAAATTGCCCTCTTATTTAATGCAAACAAAGTATATGATCGGCAGGTGGTGGAGGGTATTGG
ACAATATATTCAGGCATCGCAATGTATGTGGGATATTTTTGTAGAAGATGAATTTATCTATCATACTGATACCATTAATC
AACTTTCTATTGATGGCATTATTGCAGACTTTGATGATCCAAAAACTGTTGAATTATTGCAACACACTCTTATTCCTACT
ATAGCAGTTGGTGGATCTTATAAACAAGCTGATTTTTATCCGCACTTTCCTTATATAGCAACAGATAATATGGCATTGGT
TGAAATGGCTTTATCTCATTTACAGGAGAAAGGACTGTCACAGTTTGCATTTTATGGTTTGCAAGTAAATACTCATAAGC
ATTGGTCTATAGAACGAAGAGATGCTTTTGTAGAGTTGATGGAGAAAAATCATTACCCTATTTACCTATATGAGGGTGTG
CAGGTTCATGCTCAAAATTGGTTGGAAGAGCAACAAAAGCTAATTGTCTGGTTAAAATCTCTTCCTTCTCATACTGGTAT
TATTGCTGTTACGGATGCGCGTGCTCGTCATTTATTGCAGGCTTGTGAGTACAGTAAAATTGCTGTACCTGAAGAGCTTT
GTGTGGTTGGTATTGATAATGAAGAATTGATCCAATATTTATCGCGTATGTCCCTTTCCTCCGTAGAACAAGGCACGAGA
GAGATTGGTTATCAAGCTGCGAAATTATTACACAAATTACTCAATGGTCAAAAAGTTTCACATACCCCTATTTTAATTCC
ACCGATTACCGTTCACTCTCGAAATTCTACAGATTATCGATCATTAACAGATCCGCTTGTCATTCAAGCAATGCATTATA
TTCGTCATCGTGCCTGTCATCGAATTAAAGTAGGACAAGTTTTAGATCATCTTGAAACCTCACGTTCTAATCTTGAACAA
CGTTTTAAGAATGAAATGAATAAAACAATTCACCAAGTCATCCACGAAGAAAAAATTTCCCGAGCAAAGAATTTATTACA
ACAAACAGATATTTCTATTAAAGAAATTACTGAGATTTGCGGCTATCCATCAATTCAATATTTTTATTCTGTTTTTAAGA
AAGAATTTGAAATGACTCCTAAAGAGTTTCGACTAAATTGTTAA

Upstream 100 bases:

>100_bases
GATATAAAAATGGCCAGTTATTCTGGCTATTTTTATCTTGAAGCTAAATATCTTTTCTATTATAACTTAAATAGCAATTT
CCCATAGATAAGGATATAAA

Downstream 100 bases:

>100_bases
AGGAGCATATTTTTATTCAACTCTGTGCCATAATAACAAGTATTTTTGACCGCACTTTTATCTGAAAGACAGAAAATGAA
TATTCTAATTATTGGCCCAT

Product: xylose operon regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MTEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGIIADFDDPKTVELLQHTLIPT
IAVGGSYKQADFYPHFPYIATDNMALVEMALSHLQEKGLSQFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGV
QVHAQNWLEEQQKLIVWLKSLPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACHRIKVGQVLDHLETSRSNLEQ
RFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIKEITEICGYPSIQYFYSVFKKEFEMTPKEFRLNC

Sequences:

>Translated_387_residues
MTEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGIIADFDDPKTVELLQHTLIPT
IAVGGSYKQADFYPHFPYIATDNMALVEMALSHLQEKGLSQFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGV
QVHAQNWLEEQQKLIVWLKSLPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACHRIKVGQVLDHLETSRSNLEQ
RFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIKEITEICGYPSIQYFYSVFKKEFEMTPKEFRLNC
>Mature_386_residues
TEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGIIADFDDPKTVELLQHTLIPTI
AVGGSYKQADFYPHFPYIATDNMALVEMALSHLQEKGLSQFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGVQ
VHAQNWLEEQQKLIVWLKSLPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTRE
IGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACHRIKVGQVLDHLETSRSNLEQR
FKNEMNKTIHQVIHEEKISRAKNLLQQTDISIKEITEICGYPSIQYFYSVFKKEFEMTPKEFRLNC

Specific function: Regulatory protein for the xylBAFGHR operon

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI1789993, Length=384, Percent_Identity=57.2916666666667, Blast_Score=464, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): XYLR_HAEIN (P45043)

Other databases:

- EMBL:   L42023
- PIR:   H64182
- RefSeq:   NP_439263.1
- ProteinModelPortal:   P45043
- SMR:   P45043
- GeneID:   949767
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1106
- NMPDR:   fig|71421.1.peg.1063
- TIGR:   HI_1106
- HOGENOM:   HBG296742
- OMA:   ICGYPSL
- ProtClustDB:   CLSK2393460
- BioCyc:   HINF71421:HI_1106-MONOMER
- GO:   GO:0005622
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- Gene3D:   G3DSA:1.10.10.60
- PRINTS:   PR00032
- SMART:   SM00342

Pfam domain/function: PF00165 HTH_AraC; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 44933; Mature: 44802

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGI
CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCEEECCE
IADFDDPKTVELLQHTLIPTIAVGGSYKQADFYPHFPYIATDNMALVEMALSHLQEKGLS
EECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCH
QFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGVQVHAQNWLEEQQKLIVWLKS
HHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
CCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHH
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACH
HHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHH
RIKVGQVLDHLETSRSNLEQRFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIKEITEIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GYPSIQYFYSVFKKEFEMTPKEFRLNC
CCCCHHHHHHHHHHHHHCCCHHHCCCC
>Mature Secondary Structure 
TEQYYKIALLFNANKVYDRQVVEGIGQYIQASQCMWDIFVEDEFIYHTDTINQLSIDGI
CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCEEEEECCCCCCEEECCE
IADFDDPKTVELLQHTLIPTIAVGGSYKQADFYPHFPYIATDNMALVEMALSHLQEKGLS
EECCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCH
QFAFYGLQVNTHKHWSIERRDAFVELMEKNHYPIYLYEGVQVHAQNWLEEQQKLIVWLKS
HHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
LPSHTGIIAVTDARARHLLQACEYSKIAVPEELCVVGIDNEELIQYLSRMSLSSVEQGTR
CCCCCCEEEEECHHHHHHHHHHCCCCCCCCCHHEEEECCHHHHHHHHHHHHHHHHHHHHH
EIGYQAAKLLHKLLNGQKVSHTPILIPPITVHSRNSTDYRSLTDPLVIQAMHYIRHRACH
HHHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHH
RIKVGQVLDHLETSRSNLEQRFKNEMNKTIHQVIHEEKISRAKNLLQQTDISIKEITEIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
GYPSIQYFYSVFKKEFEMTPKEFRLNC
CCCCHHHHHHHHHHHHHCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800