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The map label for this gene is dmsB

Identifier: 16272978

GI number: 16272978

Start: 1110495

End: 1111112

Strand: Reverse

Name: dmsB

Synonym: HI1046

Alternate gene names: 16272978

Gene position: 1111112-1110495 (Counterclockwise)

Preceding gene: 16272979

Following gene: 16272977

Centisome position: 60.71

GC content: 39.48

Gene sequence:

>618_bases
ATGGAACAATATGGTTTTTATTTTGATTCTGAACGTTGCACAGGCTGTAAAACTTGTGAATTAGCCTGTAAGGATTACAA
AGATCTTGGCACAGAAGTCAATTTTCGTCGTATTTATGAATATACAGGTGGTCAGTGGAATCAACAAGCAGATGGATGCT
GGCATCAAAATATATTTGCCTATTATATGTCTATTTCTTGTAATCATTGTGCAGATCCTGCTTGTACAAAAGTTTGCCCA
ACTGGTGCAATGCACAAAAATGCAGATGGTTTCGTGATCGTCAATGAAGAAATTTGTATCGGTTGTCGTTATTGTCATAT
GGCGTGTCCTTATGATGCACCGCAATATGATGCACAAAAAGGTCATATGACAAAATGTGATGGATGTTATTCTCGCGTAA
AATCAGGTCAAAAACCGATTTGTGTTGATGCCTGCCCACTACGAGCATTGGATTTCGCTCCTATTGATGAACTTCGAACA
AAATATGGCACACAAGCCTCCATCGCACCACTACCACCGACTGATATCACTCAACCAAATTTAGTGGTAAAACCCAATAA
ATACGCTCGTTTAAGTGGCGATACAAGTGGGTTCTTAGGAAACCCAAGAGAGGTGTAA

Upstream 100 bases:

>100_bases
TGCATTAATGTACTTACGACACAACGCCCATCACCGCTTGCGAAAGGTAATCCGCAACATTCTAATTTAGTTCAAGTGGA
ACGTTTGTAGGGGGAGAATT

Downstream 100 bases:

>100_bases
GATGAATACAGGATTATATGAACTGCCATTAGTATTTTTTACAGTTTTGGCACAAAGTGCGGTCGGTGCTTGGCTTGTTT
TCACATTTGTACTATTAAAT

Product: anaerobic dimethyl sulfoxide reductase chain B

Products: NA

Alternate protein names: DMSO reductase iron-sulfur subunit

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSISCNHCADPACTKVCP
TGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYSRVKSGQKPICVDACPLRALDFAPIDELRT
KYGTQASIAPLPPTDITQPNLVVKPNKYARLSGDTSGFLGNPREV

Sequences:

>Translated_205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSISCNHCADPACTKVCP
TGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYSRVKSGQKPICVDACPLRALDFAPIDELRT
KYGTQASIAPLPPTDITQPNLVVKPNKYARLSGDTSGFLGNPREV
>Mature_205_residues
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFAYYMSISCNHCADPACTKVCP
TGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQKGHMTKCDGCYSRVKSGQKPICVDACPLRALDFAPIDELRT
KYGTQASIAPLPPTDITQPNLVVKPNKYARLSGDTSGFLGNPREV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787872, Length=203, Percent_Identity=72.4137931034483, Blast_Score=330, Evalue=3e-92,
Organism=Escherichia coli, GI1787122, Length=203, Percent_Identity=72.4137931034483, Blast_Score=327, Evalue=3e-91,
Organism=Escherichia coli, GI1790326, Length=167, Percent_Identity=33.5329341317365, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787749, Length=159, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1789370, Length=185, Percent_Identity=31.8918918918919, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI2367345, Length=195, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI226510944, Length=158, Percent_Identity=34.8101265822785, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787740, Length=127, Percent_Identity=31.496062992126, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1787478, Length=122, Percent_Identity=32.7868852459016, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI2367245, Length=172, Percent_Identity=29.6511627906977, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789067, Length=167, Percent_Identity=31.7365269461078, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788811, Length=155, Percent_Identity=29.6774193548387, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI87082179, Length=162, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787963, Length=147, Percent_Identity=29.2517006802721, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DMSB_HAEIN (P45003)

Other databases:

- EMBL:   L42023
- EMBL:   U26665
- PIR:   F64109
- RefSeq:   NP_439205.1
- ProteinModelPortal:   P45003
- SMR:   P45003
- GeneID:   950772
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI1046
- NMPDR:   fig|71421.1.peg.1006
- TIGR:   HI_1046
- HOGENOM:   HBG726839
- OMA:   CADPACT
- ProtClustDB:   CLSK870601
- BioCyc:   HINF71421:HI_1046-MONOMER
- GO:   GO:0006810
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297
- TIGRFAMs:   TIGR02951

Pfam domain/function: PF00037 Fer4

EC number: NA

Molecular weight: Translated: 22927; Mature: 22927

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
10.7 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
10.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFA
CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHCEEE
YYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQK
EEEEECCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEEEEEECCCCCCCCCCCC
GHMTKCDGCYSRVKSGQKPICVDACPLRALDFAPIDELRTKYGTQASIAPLPPTDITQPN
CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
LVVKPNKYARLSGDTSGFLGNPREV
EEECCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MEQYGFYFDSERCTGCKTCELACKDYKDLGTEVNFRRIYEYTGGQWNQQADGCWHQNIFA
CCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHCEEE
YYMSISCNHCADPACTKVCPTGAMHKNADGFVIVNEEICIGCRYCHMACPYDAPQYDAQK
EEEEECCCCCCCHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEEEEEECCCCCCCCCCCC
GHMTKCDGCYSRVKSGQKPICVDACPLRALDFAPIDELRTKYGTQASIAPLPPTDITQPN
CCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
LVVKPNKYARLSGDTSGFLGNPREV
EEECCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 8635740